Vollenhovia emeryi: 105565559
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Entry
105565559 CDS
T06016
Name
(RefSeq) exosome complex exonuclease RRP42
KO
K12589
exosome complex component RRP42
Organism
vem
Vollenhovia emeryi
Pathway
vem03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vem00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105565559
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vem03019
]
105565559
Messenger RNA biogenesis [BR:
vem03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
105565559
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
105565559
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
105565559
NCBI-ProteinID:
XP_011874245
LinkDB
All DBs
Position
Unknown
AA seq
292 aa
AA seq
DB search
MAETPLSLGEKTFIIHGVDLNLRNDGRSRCQYRSIEIETRLMKHTHGSARLRLGNITDVL
VGVKVEIDTPYAERPDEGKLDFFVDCSANATPAFEGKGGDDLATEISNILSMAYQTPDAF
DFKQLCIIPHKKCWKIYVDILILQCGGNLFDAVGAAVKAALYNTEIPRVITATLDGGEPD
IQVSDDPYDCIKLDVTNYPLVVTVCKIGDNFVIDPTSEEETCSMASVLMSVMPNGKVTSV
VKLGYGSLLPSTFIKMLQVGKDISLKLNEELMRGLEEESKLGQTKPIFGFLR
NT seq
879 nt
NT seq
+upstream
nt +downstream
nt
atggccgagacccccttgagtttgggcgagaagacgtttattattcacggagtcgacctt
aatctgagaaatgacggacggtccaggtgtcagtaccgttcaatcgagatcgaaaccagg
ttgatgaagcacacgcacggatcggcgagattacgcctaggcaacatcacggacgtatta
gtgggcgtgaaagtggagatcgacaccccgtacgccgagagaccggatgagggcaaattg
gactttttcgtagactgctccgctaacgccacaccagcgttcgagggcaaaggcggggac
gatctggcgaccgagataagtaacatcctttctatggcttatcagacgccagatgccttc
gatttcaagcagctgtgcattatacctcataagaagtgttggaaaatatacgtggacatt
ttgattcttcagtgcggcgggaatctattcgacgccgtgggcgctgcggtgaaggcggct
ttgtacaatactgaaattccgagggtgatcacagcaacgctggacggtggcgaaccggat
atccaggtgtcggacgatccttacgactgtatcaaactggatgtcacaaattatccgttg
gtagtaacagtatgcaagattggagacaatttcgtgatagatccaacgtcggaagaagaa
acctgcagtatggctagtgtccttatgtccgtgatgccgaacggcaaggtgacgtctgtg
gtcaagctgggatacggcagcttgctgcctagcacctttatcaagatgttgcaggtcgga
aaggatatcagtctcaagctaaacgaagaacttatgagaggactggaagaggaaagtaag
ctcggccaaacgaaaccaatatttggttttcttagatag
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