Vollenhovia emeryi: 105567042
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Entry
105567042 CDS
T06016
Name
(RefSeq) symplekin
KO
K06100
symplekin
Organism
vem
Vollenhovia emeryi
Pathway
vem03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vem00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105567042
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vem03021
]
105567042
03019 Messenger RNA biogenesis [BR:
vem03019
]
105567042
Transcription machinery [BR:
vem03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
105567042
Messenger RNA biogenesis [BR:
vem03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
105567042
U7-dependent histone pre-mRNA processing factors
105567042
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
SecD-TM1
Motif
Other DBs
NCBI-GeneID:
105567042
NCBI-ProteinID:
XP_011876958
LinkDB
All DBs
Position
Unknown
AA seq
1111 aa
AA seq
DB search
MDPRLHRRSEAEKAPGDLIVEWLNEASMGPTEEIKIANICKVQELLLNKEPHLLEPYLND
ILQFSLDRSAEVRKTVTGFIEEAGIKYPEVIPRIVQILLRLASDETSVVAKRALRASGRI
LRVALKWIASATVVTTEMELAWTQLSALKVQIINMIDSDNDGIRTQAVKFLEGVILIQTY
PDPDSPKKTDDFSLEDIPLTLKIARRRKLEEEANHVMDLLIKFHGSPHVSSVNLMTCMGS
LALIAKMRPQFMPNVIQALQRLQHDLPPTLSDSQVTSVQKQLKLTLLGLMKHPASIEFAS
TIAKQLTQLGAKEQEIIKAYPKPEDVRRMKKRQQEIAAATAAKRPKIEVTLIPDEAEAAP
SPVPAPKLPDLIELSENFISERLSVEIATDLVMDSMAWVPDTMTTIFQREYQPTATTDIN
IQRQTIARLLAAQIKQTKAKKSKKDKEEDAVMEDLIKNPTISVAEAKRERKREKDREKEK
EAKASLEAHEKSLAKARNRLKALKLVEVTKPLPKEIKERMLLMAVNRILLSEKTAVLGGV
AAVRSKILTTLAATFNPYIKEAVLRYITDDMRNRLDLALGWLYEEYALLQGFQRRTTLCT
KPQEAPHQAYNFLLCTLVSAIDLIQGKDRDTLLSRLYLEAPLITEEAVDALKLVSSDETR
GLVPLQLLKEMVVRRPTKQLVFLNVLLCHTGHENNTIREAAIQLVCQLYSRADLSKLIEE
YAVLYLGFLRLHNPPEIVFGQDRGRPQIESLWTESTTRACLGLYLALLSEHQDLIHELAR
VYTSMGADVKRIVLRLVEGPVRSLGMGSPQLLALVENCPKGSETLVTRIIHILTEKSAPS
AELVARVRELYQTRVSDVRFLIPVLNGLTKKEVIAALPKLIKLNPIVVKEVFNRLLGTHN
NDSGVPHTSPITPAELLIALHNIDPSKAELKTVIKATSLCFAEKQAYTQETVAVVMQHLM
EMTPLPTLLMRTVIQSLALYPRLSGFVMNILQRLILKQVWKQPKVWEGFVKCCERTQPQS
FAVILQLPPAQLAEALRMASNLRAPLLAHVEAFAENQKAHIPQSIMDVIQGKVPCDMHDE
FDIAPPDDYSNDQKPDTMEIDLSEPAPPGLD
NT seq
3336 nt
NT seq
+upstream
nt +downstream
nt
atggacccgcgcttgcacagaagatccgaggcggaaaaggcgccgggcgacttgatcgtc
gagtggttaaacgaggcctcgatgggccccactgaggaaattaagatcgcaaacatatgc
aaagtgcaggaactcctgttgaacaaggagccgcacttgttagagccctatttaaacgac
attctacaattctcgttggacagaagcgccgaggtcagaaagactgttacaggatttatc
gaagaagccgggataaagtatccggaggtgatcccacgcatagttcaaatactcctcagg
ctggcgtccgacgaaacgtcggttgtagctaaacgggcactcagggccagcggcagaatt
ctcagggtcgctctcaaatggatcgccagtgccactgtcgttacaactgaaatggaattg
gcatggacgcagctaagcgccctcaaggttcaaattataaatatgattgacagcgacaac
gatggaataaggacacaagccgtaaagtttctcgagggcgtgatattaatacagacatat
ccagatcccgacagcccgaagaagaccgatgacttctctctcgaggatattccgctaacg
ttgaaaatagcacgcagacggaaattggaagaagaggcgaatcacgttatggatttgctg
atcaagtttcacgggtctccacatgtcagcagcgttaacttaatgacgtgcatgggatcc
ttggcgttaatcgctaaaatgagaccacaatttatgccaaatgtaattcaagctttacaa
aggttgcaacacgatctaccaccgacgctgtccgattctcaagtaaccagtgtgcaaaaa
caattgaaacttactcttctcggtttgatgaaacaccctgctagcatagagtttgcttcg
accatagctaaacagctgactcagcttggagcgaaagaacaggaaattattaaagcttat
ccaaaaccggaagacgtccgtcggatgaaaaagcgtcaacaggagatagcggctgctact
gctgcgaaacggccaaaaattgaagtgactttaatacccgatgaagcagaagcagcaccg
agtcctgtcccggcgcctaaattaccagacttgattgaactgtctgaaaattttatttct
gaaagactcagtgtagagattgcaacagatttagtgatggacagtatggcatgggtcccg
gatactatgacgacaatttttcaaagagaatatcaacccacggcaactactgatattaat
atacaacgtcaaacaattgccagacttttagcggcacaaatcaaacagactaaagcaaaa
aagagcaaaaaagataaggaagaggatgccgtgatggaagacctaattaagaatcccacc
attagcgtagccgaggcaaagcgggagcgtaaacgtgaaaaagatcgggagaaagagaag
gaggcgaaagcgtcgttggaggctcatgaaaaatctctggcaaaagccagaaatcgtttg
aaggcgttgaaattagttgaagtgacaaaaccacttccgaaagagattaaagaacgaatg
ttactgatggcagtcaataggatattactttcagaaaagactgcggttcttggtggcgta
gctgctgtaagatccaaaattctgactacgctagcggccaccttcaatccttacattaaa
gaagctgtgctgcgttatattaccgatgacatgcgaaatcgactagatttagcgctaggt
tggctatatgaagagtatgcgttgctacagggatttcaaaggcgcactacgttgtgtaca
aaaccacaagaagccccacatcaggcatataatttcttattgtgcactttggtttcagct
attgacttgattcagggcaaagatcgcgatactctgttatcaagactttatctggaagcc
ccgttaataacagaggaagctgtagacgctttaaaactggtgtcgtctgatgagactaga
ggtctcgtgccattgcagcttttgaaagaaatggtagtgcgtagaccaacgaaacaactg
gtatttttaaacgttttgttatgccacaccggacatgaaaacaatacgatacgggaggct
gcaatacaattggtctgtcagttatacagccgagcagacttaagtaaactgatcgaggaa
tatgcagttctgtatttaggatttttgcgccttcataatccaccggagattgttttcggg
caggacagaggcagaccgcaaatcgagagtctgtggaccgaatcgactacacgtgcctgc
ctgggattatatcttgctcttctcagcgaacatcaagatctcattcacgaattggctaga
gtatatacgtcaatgggagcagatgtgaaacgtattgtgttaagactggtggaagggcca
gtgagatctctgggtatgggtagcccgcaactgctcgcacttgttgaaaactgtccaaaa
gggtctgaaactttagtcacaaggatcatacatatccttacggagaaatctgccccaagc
gcagagttggtagccagggtacgcgagttatatcagactagagtctccgatgtcagattt
ttaatacctgttctgaatggactgacaaagaaagaagtgatcgccgcattaccaaaatta
ataaaattaaatcctatcgtcgtaaaagaggtgtttaatagattactcggaacacataat
aacgacagcggggtacctcatacgtcgcctattacgcctgcggaattattgatagctcta
cataatatagatccaagcaaggctgaattaaagaccgtcattaaagcaacgtctctttgt
ttcgctgagaaacaagcgtacacgcaggaaacagtcgccgttgtgatgcaacacctcatg
gagatgacgcctttaccgacattattgatgcgcacagtcatacaaagtctggcactttac
cccaggctaagtgggttcgttatgaacatactacaacgtctgattctgaagcaagtgtgg
aaacagccgaaagtgtgggaaggtttcgtcaagtgctgcgaacgcacgcagccgcaaagt
ttcgctgttattttgcagttaccaccggcacagttagcggaggcactccgaatggcgagc
aatttacgtgctcctttactagctcatgttgaagcttttgccgagaatcagaaagcacac
attccacaatcaataatggatgtcatacagggtaaagtgccctgtgacatgcacgatgaa
tttgatattgcaccacctgatgattattcgaatgatcaaaaaccagatacaatggaaatt
gatctttcggaaccagcccctcccggtttagattag
DBGET
integrated database retrieval system
