Vollenhovia emeryi: 105567065
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Entry
105567065 CDS
T06016
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
vem
Vollenhovia emeryi
Pathway
vem03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
vem00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
105567065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vem03021
]
105567065
03036 Chromosome and associated proteins [BR:
vem03036
]
105567065
Transcription machinery [BR:
vem03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
105567065
Coactivators
SAGA/TFTC/STAGA complex
105567065
Chromosome and associated proteins [BR:
vem03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
105567065
STAGA complex
105567065
TFTC complex
105567065
SAGA complex
105567065
SLIK complex
105567065
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
TFIID_NTD2
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_IFT122_1st
NBCH_WD40
Beta-prop_TEP1_C
ANAPC4_WD40
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_SCAP
WDR90_beta-prop_4th
WD40_RFWD3
Beta-prop_EIPR1
Beta-prop_DCAF4
Beta-prop_SPT8
Beta-prop_WDR19_1st
Beta-prop_HPS5
Beta-prop_Nup120_160
Beta-prop_DCAF12
Beta-prop_RIG_1st
VPS8_N
DUF5713
ERp29
Motif
Other DBs
NCBI-GeneID:
105567065
NCBI-ProteinID:
XP_011877003
LinkDB
All DBs
Position
Unknown
AA seq
653 aa
AA seq
DB search
MDTDKSTMLAVLQLLKKHNFKGTEELFRKEANLTDVSLDDAQQSDSDVTSVLSAYKSEGD
PAQYEKAYSELKKFVEGALDIYKHELGTILYPVLVHMYLELVYNNHSKEAKQLMEKFSGN
IEEYYQDDLKRLSNVTKREQMAGNELTDTFKSNQFIIRMSRDTLSILKRHLQEKKHSVLL
NIIQEHLYFDMYEGVARNKQQIEATSGATVGEATRQDNKAKVYYGLLKEPDIQCVAPVEE
EKDDTGGDNDGDKPKKKKAKKDPLFSKKTKSDPNAPPMGRMPLPNLKDVDKQEKIKALRE
ASKRILLGPDTLPSICFYTLLNTTYTVTATEIAEDSSLLATGFSDSGIKVWSLVPQKLRL
MKTGEQLQEVNRESGDVLARMMDDRTSETAKHLYGHSGPIYSLSFSPDRNLLLSSSEDTT
IRLWSLHTWTCVVCYKGHLFPVWCVKFSPHGYYFASASSDKTARLWATDSHQPLRMFAGH
YSDVDVIQFHPNSNYVASGSSDMTVRLWDCVGGSQVRLMTGHKGPIFSLAFSTEGRFLAS
AGADHRVLMWDLAHGHLVAALSGHTANIHCLSFSRDGNILVSGSLDCTLKLWDFTKLAEE
MSLEDVNVSHNPDVKTNSESYLLRTFATKSSSVLALHFSRRNLLLGVGMFDSG
NT seq
1962 nt
NT seq
+upstream
nt +downstream
nt
atggataccgataagagtactatgctcgctgttctgcagcttttgaagaagcacaatttc
aagggaaccgaggaattgtttagaaaggaagcaaatctcacggacgtctcgttggatgac
gctcagcaatctgattccgatgtgaccagcgtcctttccgcttacaaaagcgagggagac
cctgcgcagtatgaaaaggcgtatagcgaattgaagaagtttgtagaaggagctttggac
atttataagcatgagttgggaacgatattgtatccggttttggtgcacatgtatttggaa
ctggtttacaataatcattccaaagaagcgaagcagctcatggagaagttcagtgggaac
atagaagagtattaccaggatgatttgaagagattgtccaacgtaacgaaacgtgagcag
atggcagggaacgaattgactgacacttttaaatccaatcagtttataattagaatgtcg
cgggacaccctttcgatactgaaacggcatctgcaagagaagaaacatagcgttctgctg
aacatcatacaggagcatctttacttcgatatgtacgagggcgtggcccgcaacaaacag
cagatagaagcaacgtctggcgcaacggtgggagaggccaccaggcaagataacaaggcg
aaggtctattacggacttctgaaggaacctgatattcagtgcgtagcgccagtcgaagaa
gagaaggacgacacgggtggtgacaacgacggggacaagccgaagaagaaaaaagcgaag
aaggacccgctgttttcgaagaagaccaagtctgacccgaacgcgccgccaatgggcaga
atgcccttgcctaatctaaaagacgtagataaacaggaaaaaattaaggcactgagggag
gcgtcaaagagaattcttctgggacccgacacgttaccgtccatatgtttttatacattg
ttgaacactacttatactgtaacggcgacggaaatagcggaagactcgagcctattagcc
accggattcagcgattccggcataaaggtatggagtctagtcccacaaaaactgaggctg
atgaaaacgggcgagcaattacaggaagtcaatagagagtcaggggacgtattggccaga
atgatggacgatcgaacgtctgaaactgcgaagcatctctacggccacagtggaccaatt
tacagcctttcgtttagtccagatagaaatctgctgctttcgtcatccgaggatactaca
ataagactatggtcgttgcacacatggacctgcgtcgtctgctacaagggtcacctattt
cccgtgtggtgcgtgaaattctcaccgcacggttattacttcgcgagcgcgtcaagtgac
aaaaccgcgagattgtgggcgaccgactctcatcaaccgctacgaatgttcgccggccat
tactcggatgttgatgtaattcagttccatccaaattcgaattacgttgcgagcggctca
agcgacatgaccgtgagattgtgggattgcgtgggtggcagtcaagtccgattgatgact
gggcacaaagggccgattttctccctagctttctcaacagagggacgattcttagcttcg
gccggcgcggaccaccgtgtgctcatgtgggatttagcacacggccatcttgtcgcagct
ctgtccggccacacggctaacattcactgtctgtcgttcagtcgagacggcaacattcta
gtctcaggttcgttagattgcacgctgaaattatgggacttcacaaaattggcggaggag
atgagcttggaggacgtcaacgtttcccataatccagatgtaaaaactaactcggagtct
tatctactacgtacctttgcgaccaaaagttcatctgtcctggcgctgcatttttcacgc
aggaatctactgctgggtgtcggcatgttcgactcgggatag
DBGET
integrated database retrieval system
