Vollenhovia emeryi: 105569320
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Entry
105569320 CDS
T06016
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
vem
Vollenhovia emeryi
Pathway
vem03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vem00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105569320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vem03019
]
105569320
03041 Spliceosome [BR:
vem03041
]
105569320
Messenger RNA biogenesis [BR:
vem03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
105569320
Spliceosome [BR:
vem03041
]
Complex B
Other components
Prp19-related factors
105569320
Complex C
105569320
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_8
TPR_15
TPR_12
RPN7
ARM_TT21_C
PPR
TPR_10
NRDE-2
Mad3_BUB1_I
DHR-2_Lobe_A
4HB_MCP_1
SNAP
Motif
Other DBs
NCBI-GeneID:
105569320
NCBI-ProteinID:
XP_011881069
LinkDB
All DBs
Position
Unknown
AA seq
843 aa
AA seq
DB search
MLERKDDEGNLYAFNEEDLPYEEEILRNPYSVKHWQRYIDHLKNTNSKNLNVVYERALKE
LPGSYKLWYNYLRQRVSQLKGRCITDPLYEDVNNAFERALVFMHKMPRIWMDYCTLMTEE
CYITRSRQVFDRSLRALPITQHHRIWPLYIHFLKKHNVYETAVRVFRRYLKLAPEDTEEY
IEYLISIGRLDEAAVKLAQIVNQDDFVSKHGKSNHQLWNELCDLISKNPSKIKSLNVDAI
IRGGLRRYTDQLGPLWNSLADYYVRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFE
ELSLKKLIEEAARNPTDEDDIKLELRLARLEHLMERRLLLLNSVLLRQNPHNVAEWHKRV
KLYEGQPHEIINTYTEAVQTVEPQLAVGKLHTLWVAFGKFYEENGQIEDARVVFEKATHV
PYTKVDDLASVWCEWAEMEIRHGNCKEALKLMHRATTMPARKVAYHDEAETVQMRLYKSL
KVWSMYADLEESFGTFKTCKAVYDKIIDLKIATPQIIINYGLFLEENNYFEEAFRAYEKG
IALFKWPNVYDIWNTYLTKFLKRYGGTKLERTRDLFEQCIEYCPPKYAKALYLLYAKLEE
EHGLARHAMSVYERATNAVLPEERFDMFNIYIKKAADIYGVPKTRQIYEKAIEVLNDENT
REMCLRFAEMETKLGEVDRARAIYAHCSQICDPRVTSNFWQIWKEFEVRHGNEDTMREML
RIKRSVQAMYNTQVNMMSAQMLNNASNQVADVPMDAMRLLDSKITSSADNAAADIKGGIK
FVRGVTEKDGRAESHVNNPDEIDIDIDDENDNDAEIEEDIPIEKQTIPSQVFGSLKAAQG
EED
NT seq
2532 nt
NT seq
+upstream
nt +downstream
nt
atgttggaacgtaaagatgacgaggggaatttatatgcctttaacgaggaagatttacca
tacgaggaagaaattttacgaaatccatattcagtgaaacactggcaacgctatatcgat
cacctgaaaaatacaaacagtaagaatttaaatgtcgtatacgaacgggcattgaaagag
ctacctggcagttacaagctgtggtataattatcttcgacaacgtgtcagccagttgaag
ggccgctgtataacagatccattgtacgaagatgttaataatgcatttgagcgcgcttta
gtatttatgcataaaatgccacgcatatggatggattattgtaccttaatgaccgaagaa
tgttatataacgcgatcgcgtcaagtgtttgatcggtctcttagagcgctgcctatcaca
cagcatcatcgtatatggccattgtatattcatttcttgaaaaagcacaatgtttatgaa
actgccgttagagtctttaggagatacttgaagctagcacctgaagatacagaagaatat
atcgaatatttgatatcgatcggaagactcgacgaggctgccgtgaaactcgcgcagatt
gtcaatcaggatgattttgtatcgaaacacgggaaatcgaatcatcaactgtggaatgaa
ttatgtgatttaatatcaaagaatccttccaagattaagtctttgaatgtagatgctatt
attagaggtggcttaagacgttacacggatcaattgggacctttatggaattcattggca
gattattacgtccgaagtggtctctttgaaagggcgagggatatctacgaagaagctata
cagactgttaccaccgtcagagattttacacaagttttcgatgcctatgcacaatttgag
gaacttagtctgaagaagctcatcgaagaagctgcaagaaatcctactgacgaagacgac
atcaaattagaattgagactggcacgattggaacatcttatggagaggagactgttattg
ctcaattctgtattattacggcaaaatccgcacaatgtagcagaatggcataaaagagta
aaactttatgaaggacaaccacatgagataattaatacatacacagaagcggtgcagact
gttgaaccgcagttggcagttggtaaattgcacacattatgggttgcgtttggcaaattt
tacgaggaaaacggacaaatagaggatgctagagtggtgtttgaaaaggcgactcatgta
ccatacaccaaggtagacgatcttgcctcggtatggtgcgagtgggcagaaatggaaatt
agacatgggaactgcaaagaagctttaaaactcatgcatcgtgctactacaatgccagct
agaaaagttgcataccacgacgaagcggaaacggtacaaatgagattatacaaatcttta
aaagtatggtctatgtatgcagatttggaagaaagtttcggaacgttcaagacctgcaaa
gcagtgtacgataaaataatcgacctgaaaatcgcaactcctcaaatcatcattaattat
ggactgtttttggaagaaaataattactttgaggaagcatttcgggcatatgaaaaaggt
atcgcgttattcaagtggcctaatgtttatgatatttggaacacgtacctcacgaaattt
ttaaaacgttacggtgggacaaaactggaacgtaccagagatttgtttgagcaatgtata
gaatattgtccaccaaagtacgccaaagccttatatttgctgtacgccaaactggaagaa
gaacatggcttggcgagacatgccatgtctgtgtatgaacgtgcgacaaatgctgtcctc
cccgaagaaagattcgatatgtttaatatatatataaagaaagctgccgacatatatggt
gtgccgaaaactcgacaaatatacgaaaaggctattgaagtgttgaatgatgaaaacaca
agagaaatgtgtttacgatttgcagaaatggagacgaaattgggagaagtagatagagca
agagctatatacgcgcattgtagccaaatatgcgatccgagagttacatccaacttttgg
caaatttggaaagaatttgaagtgaggcatggaaacgaagatacaatgcgtgaaatgctt
cgaatcaagcgcagcgtgcaagctatgtacaacactcaagtgaatatgatgtctgcacaa
atgttgaataacgcatcgaatcaagtagccgacgttccaatggatgctatgcgtttatta
gatagtaaaattacatcgagtgcagacaacgccgctgctgatatcaaaggaggcatcaaa
tttgtacgtggcgtaacggaaaaggatggtagagcggaatctcatgtgaataatccagat
gagattgatatcgatatagacgatgaaaatgataacgatgcagaaatagaggaagacata
ccgatcgaaaaacagactataccatcgcaagtatttggcagtttaaaggcagcccaaggt
gaagaggattga
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