Verrucosispora sp. NA02020: HUT12_04590
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Entry
HUT12_04590 CDS
T06958
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ver
Verrucosispora sp. NA02020
Pathway
ver03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ver00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HUT12_04590 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ver03400
]
HUT12_04590 (mfd)
Enzymes [BR:
ver01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HUT12_04590 (mfd)
DNA repair and recombination proteins [BR:
ver03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HUT12_04590 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
UB2H
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QKW12142
UniProt:
A0A7H8K7Y1
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All DBs
Position
1065519..1069247
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AA seq
1242 aa
AA seq
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MTALTGLFAAALADPGLARVRDLARSGAAQVDGLDLTAPPALRPFAVAAVAADPAEQGRD
ATVGGAGRPVLAVTATSREAEDLVAALGGLLPAEQVAIFPSWETLPHERLSPRSDTVGRR
LAVLRRLAHPDSADAHGRTGPLRVVVAPVRSMLQPQLKGLGDLEPVRLSAGDEADLEQVA
RRLTDMAYARVDLVTKRGEFAVRGGILDVFPPTDEHPSRVEFWGDEVEEIRTFAVADQRT
IEQVPQLWAPPCRELLLTPAVRERAAELAGQHPELAEILDKLAGGIPVEGMESLAPALIG
DDSMELLLDCMPEGTHVLLCDPERIRTRAHDLVRTSEEFLQASWAAAAVGGQAPIDLGAA
AFRTLADVRAAAATRRRPWWTLSPFGMADDLHSVRSAGHRRGGRIMAEPDAAPERQPWED
APEAVDVTPDDAIAVSLSAQPAPLYHGETDRVVADLTRWTGEGWSVALVFEGHGPAHRAV
EVLRDGGLGARMTEQVPDAPVSGEVLVTCGSLTGGFVDEAARFVLLTGSDVTGGRGVSTR
DMRKMPSRRRNTIDPLELRAGDHVVHEQHGIGRYVELVQRTVNGASREYLVIEYAASKRG
QPGDRLFVPTDQLDQLSRYVGGEQPTLHKMGGSDWQKSKARARKAVKEIAAQLIQLYAAR
KASKGHTFGPDTPWQRELEDAFPWQETPDQLAAIEEVKRDMEQSVPMDRLICGDVGYGKT
EIAVRAAFKAVQDGKQVAVLVPTTLLVQQHYNTFAERMSQFPVTIRQLSRFQTPKEAEQT
LAMVADGTSDIVIGTHRLLAAATRFKSLGLVIVDEEQRFGVEHKEHLKSMRAAVDVLSMS
ATPIPRTLEMAITGIREMSTIATPPEERHPVLTAVGAQDDRQVAAAIHRELLRDGQVFYL
HNRVESIERAARRLRELVPESRVAVAHGQMGEDALEKVMVGFWEKEFDVLVCTTIVESGI
DIPNANTLIVERADLLGLAQLHQIRGRVGRGRERAYAYFLYPPEKPLTEHAHERLATIAQ
HTELGAGMYVAMKDLEIRGAGNLLGGEQSGHIEGVGFDLYVRMVGEAVQAFKGERPEEET
DVKIDLPVDAHLPHDYVGVERLRLEMYRKLAEARDEERLREVAAEMTDRYGEPPAPVQNL
IAVARFRLLARRYGLTDVSVQGKHLRFGPLPLPDSKQMRLKRYHPDSVYKSALDQVSVPR
PTTRRIGGEPLRDQALLEWCAQLLSDVLGAPAVPAGAGATGG
NT seq
3729 nt
NT seq
+upstream
nt +downstream
nt
atgactgcgctcaccggactgttcgccgccgccctggccgacccggggctggcccgtgtg
cgtgacctggcgcgctcgggtgcggcccaggtcgacggcctcgacctgaccgcgccaccg
gcgttgcgcccgttcgcggtcgccgccgtcgccgcggaccccgccgaacaggggcgggac
gcgacggtcggcggtgccgggcggccggtgctggcggtcaccgccaccagccgtgaggcg
gaggacctggtggcggcgctgggtgggctgctccccgccgagcaggtggcgatcttcccg
agctgggagacgctgccgcacgagcggctctcgccgcgctccgacacggtcggtcgacgg
ctggcggtgctgcgccggctggcccacccggactcggcggacgcgcacgggcgcaccggg
ccgctgcgggtggtcgtggcgccggtccggtcgatgctgcaaccgcagctcaagggactc
ggcgacctggagccggtgcggctgtccgccggggacgaggccgacctggagcaggtggcg
cgccggttgaccgacatggcgtacgcgcgggtcgacctggtcaccaaacggggcgagttc
gccgtccgtggcggcatcctggacgtcttcccgcccaccgacgagcacccgtcgcgggtc
gagttctggggcgacgaggtggaggagatccgcaccttcgccgtggccgaccagcgcacc
atcgaacaggtgccgcaactctgggcaccgccctgccgggagctgctgctcaccccggcc
gtccgggagcgggccgccgagctggccgggcagcaccccgagctggccgagatcctggac
aagctggccggcggcataccggtggagggcatggagtccctcgccccggcgctgatcggc
gacgactcgatggagttgctgctggactgcatgcccgagggcacgcatgtcctgctctgc
gacccggagcggatccgcacccgggcgcacgacctggtgcgtacctctgaggagttcctc
caggccagctgggccgccgcggccgtcggcggccaggccccgatcgacctcggcgccgcc
gccttccgcaccctggccgacgtccgcgcggccgccgccacgcggcgccggccctggtgg
acactgtccccgttcgggatggccgacgaccttcattcggtccggagtgccggccaccgg
cgcggaggccgaattatggccgagccggacgccgccccggagcggcagccgtgggaggac
gcgccggaggcggtcgacgtcacccccgacgacgccatcgcggtgagcctgagcgcccag
cccgcgccgctctatcacggcgagaccgaccgggtggtggccgacctgacgcgctggacc
ggtgagggctggtcggtcgcgctggtcttcgaggggcacggccccgcccaccgggccgtc
gaggtgctccgcgacggtggcctgggcgcccggatgaccgagcaggtcccggacgcgccc
gtgtcgggcgaggtcctggtcacctgcggcagcctcaccggcggcttcgtcgacgaggcg
gcccggttcgtgctgctcaccggcagcgacgtcaccggtggccggggcgtctccacccgg
gacatgcgcaagatgccgagccggcggcgcaacacgatcgacccgttggagctgcgggcc
ggcgaccacgtggtgcacgagcagcacggcatcggccggtacgtggagctggtgcagcgt
acggtcaacggcgcgtcgcgggagtacctggtcatcgagtacgccgcgagcaagcgcggc
cagcccggcgaccgtctcttcgtccccaccgaccagctcgaccagctcagccggtacgtc
ggtggtgagcagccgacgctgcacaagatgggcggctcggactggcagaagtccaaggcg
cgggcccgcaaggcggtcaaggagatcgccgcccagctcatccagctctacgccgcccgc
aaggcgtccaaggggcacaccttcggcccggacaccccgtggcagcgggaactggaggac
gccttcccctggcaggagacgcccgaccagctcgccgccatcgaggaggtcaagcgggac
atggagcagagcgtcccgatggaccggctgatctgcggcgacgtcggctacggcaagacc
gagatcgcggtacgcgcggcgttcaaggcggtgcaggacggcaagcaggtggccgtgctg
gtgcccaccaccctgctggtgcagcagcactacaacacgttcgccgagcggatgagccag
ttcccggtgacgatccggcagctctcccggttccagacgccgaaggaggccgagcagacg
ctcgcgatggtcgccgacggcacctccgacatcgtcatcggcacccaccgactactggcg
gctgccacccgcttcaagtcgctcgggctggtcatcgtcgacgaggagcagcggttcggt
gtcgagcacaaggagcacctgaagtcgatgcgggccgccgtcgacgtgctgagcatgtcg
gcgaccccgatcccgcgcaccctggagatggcgatcaccggcatccgggagatgtccacc
atcgccaccccgccggaggagcggcatccggtgctcaccgccgtcggggcgcaggacgac
cggcaggtggccgccgccatccaccgcgagttgctccgtgacggacaggtcttctacctg
cacaaccgggtcgagtcgatcgagcgggcggcccgccggctgcgcgagctggtgcccgag
tcccgggtcgcggtggcgcacggccagatgggcgaggacgccctggagaaggtcatggtc
ggcttctgggagaaggagttcgacgtcctggtctgcaccacgatcgtggagtccggcatc
gacatcccgaacgccaacaccctgatcgtggagcgggccgatctgctcggcctggcccag
ttgcaccagatccggggccgggtgggccggggccgggagcgggcgtacgcgtacttcctc
tatccgccggagaagccgctcaccgagcacgcgcacgagcggctggccaccatcgcccag
cacaccgagttgggtgccggcatgtacgtggcgatgaaggacctggagatccggggtgcc
ggcaacctgctcggcggcgagcagtccgggcacatcgagggcgtcgggttcgacctctac
gtccggatggtcggcgaggcggtgcaggcgttcaagggcgagcgtcccgaggaggagacg
gacgtcaagatcgaccttccggtggacgcgcacctgccgcacgactacgtcggcgtggaa
cggctgcgcctggagatgtaccgcaagctcgccgaggcgcgcgacgaggaacggctgcgc
gaggtggcggccgagatgaccgaccgctacggcgagccgcccgcaccggtgcagaacctg
atcgcggtggcgcggttccggctgctggcccgccggtacggcctcaccgacgtcagcgtg
cagggcaagcacctgcgcttcggcccgctgccgctgcccgactcgaagcagatgcggctc
aagcgctaccacccggactcggtctacaagtccgcgctcgaccaggtcagtgtgccccgg
ccgacgacccgccggatcggtggcgagccgttgcgcgaccaggctctgctggagtggtgc
gcgcagctgctctccgacgtcctcggcgccccggcggtgcctgcgggtgcgggtgccacc
ggtgggtag
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