Verrucosispora sp. NA02020: HUT12_28485
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Entry
HUT12_28485 CDS
T06958
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ver
Verrucosispora sp. NA02020
Pathway
ver03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ver00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HUT12_28485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ver03021
]
HUT12_28485
03400 DNA repair and recombination proteins [BR:
ver03400
]
HUT12_28485
Enzymes [BR:
ver01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HUT12_28485
Transcription machinery [BR:
ver03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HUT12_28485
DNA repair and recombination proteins [BR:
ver03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HUT12_28485
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
QKW17495
UniProt:
A0A7H8KL11
LinkDB
All DBs
Position
complement(6379484..6383371)
Genome browser
AA seq
1295 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPQRDWEC
YCGKYKRVRFKGIICERCGVEVTRSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFASYVVTSVDAEARHRDLSTIENEILAEKRQSENSRDSEIEKRAAKLEAD
LAELEAEGAKADVRRKVKEGGEREMRQIRDRAQREIDRLDEVLDTFRKLDSKQLVTDELL
YRELRDRFGEYFTGGMGAEAIKALVQNMDLAAEAENLRETIRTGKGQRKIRALKRLKVVA
AFQNTRNSPLGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPKLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
PVVWDVLEEVIGEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHVPLSAEAQAEARILMLSSNNILKPADGKPVTMPTQDMVIGLYHLTHLTTGERGEGR
AFSSDAEARMAYDNGELHLQAPVKIRLRNVVEVDNGVGGQPWTAPEGWVQGEPLTVETTL
GRVLFNETLPQGYRFVNYEIRKGQLSAIVNDLAERFPKVALAATLDGLKEAGFHWATWSG
VTIGMEDVIAPPRKREILERYEKEADRIDKQYQRGLMTAEERRGELIEIWTKATNEVAKE
MDTALPQENPLWKMINSGARGNLLQLRQIAAIRGLVANPKGEIIPRPIKASYREGLSVLE
YFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTDRAIPMQVGQQLDGR
LVVHEHAETSVHARTLADDIKGPDGTVVAERGSDINSILVDKIVAAGVDHIRVRSVLTCE
SKLGVCGACYGRSLPTGKIVDVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGEDITQGL
PRVQEIFEARIPKGKAPIADTPGRIRIEDGERSRKIVVIPDDGSDEIVYDKISKRVRLRA
HDGDHVEVGEKLTEGTIDPHELLRILGPRAVQVHLTQEVQEVYRSQGVLIHDKHIEIIIR
QMLKRVTVIDSGSTEFLPGVLVDRALFESENRRLVGEGGEPAAGRPVLMGITKASLATDS
WLSAASFQETTRVLTDAAIHARSDSLIGLKENVIIGKLIPAGTGISKYRNVRVEPTEEAK
AKVYSMTGYPETDYGFGPASGQAVPLDDFDFGSYR
NT seq
3888 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaactttttcgacgagttgcgaattgggctggcgaccgccgacgacatc
cgtcagtggtcgcacggcgaggtcaagaagcccgagacgatcaactaccgcaccctgaag
ccggagaaggacgggctcttctgcgagaagatcttcggtcctcagcgggactgggagtgc
tactgcggcaagtacaagcgggtccggttcaagggcatcatctgtgagcgctgcggcgtc
gaggtgacccgctccaaggtccgccgggagcggatgggccacatcgagctcgccgcgccg
gtgacccacatctggtacttcaagggcgtgccgagccggctgggttacctgctggacctc
gccccgaaggacctcgaaaagatcatttacttcgcctcgtacgtcgtgacgagcgttgac
gccgaagcgcgtcaccgtgacctctcgaccatcgagaacgagatcctggccgagaagcgg
cagtccgagaacagccgcgactcggagatcgagaagcgggccgccaagctcgaggccgac
ctggccgagctggaggccgagggcgcgaaggcggacgtccggcgcaaggtcaaggagggc
ggagagcgcgagatgcgccagatccgcgaccgggcccagcgcgagatcgaccgcctcgac
gaggtgctggacaccttccgcaagctcgactcgaagcagctggtcaccgacgagctgctc
taccgcgagctgcgtgaccggttcggcgagtacttcaccgggggcatgggcgccgaggcg
atcaaggccctggtgcagaacatggacctcgccgccgaggcggagaacctccgggagacc
atccgtaccggcaaggggcagcggaagatccgggcgctcaagcggctcaaggtcgtcgcg
gcgttccagaacacccgcaactcgccgctcggcatggtgctggactgcgtaccggtgatc
ccgccggacctgcgtccgatggtgcagctcgacggtggccgcttcgcgaccagcgacctg
aacgacctgtaccgccgcgtgatcaaccggaacaaccggctcaagcggctgatcgacctc
ggcgcgcccgagatcatcgtcaacaacgagaagcggatgctgcaggaggccgtcgacgcg
ctgttcgacaacggccgccgcggtcggccggtcaccggcccgggtaaccgcccgctgaag
tcgctgtccgacatgctcaagggcaagcagggccggttccgtcagaacctgctgggcaag
cgcgtcgactactccggccgttcggtcatcgtggtcggcccgaagctcaagctgcaccag
tgcggcctgcccaagcagatggcgctggagctgttcaagccgttcgtgatgaagcggctg
gtcgacctgaaccacgcacagaacatcaagtccgccaagcggatggtcgagcggcagcgg
ccggtcgtgtgggacgtgctggaagaggtcatcggcgagcacccggtgctgctcaaccgg
gcgcccaccctgcaccgactcggcatccaggcattcgagccgcagctggtcgagggcaag
gccatccagatccacccgctggtctgcaccgcgttcaacgcggacttcgacggtgaccag
atggcggtgcacgtgccgctctccgccgaggcccaggccgaggcccggatcctgatgctg
tcgtcgaacaacatcctcaagccggccgacggcaagccggtcaccatgcccacccaggac
atggtcatcgggctctaccacctgacccacctcaccaccggtgagcgcggggagggacgg
gcgttcagctcggacgccgaggcacggatggcgtacgacaacggcgagctgcacctgcag
gcgccggtcaagatccggctgcggaacgtggtcgaggtggacaacggcgtcggtgggcag
ccgtggaccgcgcccgagggctgggttcagggtgagccgctgaccgtggagaccacgctc
ggccgggtgctgttcaacgagaccctgccgcagggctaccggttcgtgaactacgagatc
cgcaagggtcagctctccgcgatcgtcaacgacctcgccgagcggttccccaaggtggcc
ctggcggccaccctggacgggctcaaagaggccggtttccactgggccacctggtccggc
gtgaccatcggcatggaggacgtcatcgctccgccgcgcaagcgggagatcctggagcgg
tacgagaaggaagccgaccggatcgacaagcagtaccagcgtggtctgatgaccgccgag
gagcgtcgcggcgagctcatcgagatctggaccaaggcgaccaacgaggtcgccaaggag
atggacaccgcgctgccgcaggagaacccgctgtggaagatgatcaactcgggtgctcgc
ggtaacctgctccagctccggcagatcgcggcgatccgtggtctggtggccaacccgaag
ggcgagatcatcccgcggccgatcaaggccagctaccgggagggtctgtccgtgctggag
tacttcatctccacgcacggtgcccgtaagggtctcgcggacacggccctgcgtaccgcc
gactcgggttacctgacccggcgtctggtggacgtctcgcaggacgtcatcatccgcgag
gaggactgcggcaccgatcgggccatcccgatgcaggtgggtcagcagctcgacggccgg
ctggtggtgcacgagcacgccgagacgagcgtgcacgcccgtaccctcgccgacgacatc
aaggggccggacggcaccgtcgtcgccgagcgtggctcggacatcaactcgatcctggtc
gacaagatcgtcgccgccggggtcgaccacatccgggtgcgcagcgtgctcacctgcgag
tcgaagctgggcgtctgcggtgcgtgctacggccgctcgctgccgaccggcaagatcgtg
gacgtcggcgaggcggtcggcatcatcgcggcccagtcgatcggtgagccgggtacgcag
ctgacgatgcggaccttccacaccggtggtgtcgcgggtgaggacatcacccagggtctg
ccgcgtgtccaggagatcttcgaggcccggatcccgaagggtaaggcgccgatcgccgac
acccccggccggatccggatcgaggacggcgagcggtcgcgcaagatcgtcgtgatcccc
gacgacggcagcgacgagatcgtgtacgacaagatctcgaagcgggtccggttgcgggcg
cacgacggcgaccacgtcgaggtcggcgagaagctcaccgagggcaccatcgacccccac
gagctgctccgtatcctcggcccgcgcgcggtccaggtccacctgacccaggaggtccag
gaggtctaccgctcgcagggtgtgctcatccacgacaagcacatcgagatcatcatccgc
cagatgctcaagcgggtgacggtcatcgactccggctcgaccgagttcctgccgggtgtg
ctggtcgaccgggcgctgttcgagtcggagaaccgccgactcgtcggagagggcggcgag
cccgccgctgggcgtccggtgctgatgggtatcaccaaggcctcgctggccaccgactcc
tggctctcggcggcctccttccaggagaccacccgggtgctgaccgacgcggcgatccac
gcccgcagcgactcgctgatcggtctcaaggagaacgtgatcatcggtaagctcatcccg
gccggtaccggcatcagcaagtaccgcaacgtccgggtcgagccgaccgaggaggcgaag
gccaaggtctactcgatgaccggctacccggagaccgactacggtttcgggccggccagt
ggccaggcggttccgctggacgacttcgacttcgggtcgtaccgctag
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