Verrucosispora sp. NA02020: HUT12_28755
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Entry
HUT12_28755 CDS
T06958
Name
(GenBank) DEAD/DEAH box helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ver
Verrucosispora sp. NA02020
Pathway
ver03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ver00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HUT12_28755
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ver03019
]
HUT12_28755
03400 DNA repair and recombination proteins [BR:
ver03400
]
HUT12_28755
Enzymes [BR:
ver01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HUT12_28755
Messenger RNA biogenesis [BR:
ver03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HUT12_28755
DNA repair and recombination proteins [BR:
ver03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HUT12_28755
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
AAA_30
Pribosyltran
Motif
Other DBs
NCBI-ProteinID:
QKW16347
UniProt:
A0A7H8KJE7
LinkDB
All DBs
Position
complement(6438187..6440346)
Genome browser
AA seq
719 aa
AA seq
DB search
MSQERTTIRQRAEAVLRRLAGEDARLREDQWRAIEALVVDRRRVLCVQRTGWGKSAVYFV
ATALLRQEVDGREPAGPTVIVSPLLALMRNQVESAARAGIRARTINSANLDEWDEITGEI
HAGAVDVLLISPERLNNPDFRDGVLPRLAATTGLLVVDEAHCVSDWGHDFRPDYRRLRTF
LGNLPEQTPVLATTATANERVTRDVAEQLGTEAVTSGRQRPDVLVLRGSLDRESLRLGVL
DLPSPAHRLGWLADHLDRLPGSGIIYTLTVASATETAEFLRSRGWTVAAYTGQAEDADRR
AAEQDLLDNKIKALVATSALGMGFDKPDLGFVVHLGAPPSPIAYYQQVGRAGRAVEHAEV
LLLPGVEDQAIWRYFASLAFPPEDQVRAVLAALHTGRPLSTQALEPLVDLRRARLELMLK
VLDVDGAVRRVRGGWLATGETWVYDEPRLRRVAAARADEQQAMLGYAATTDCRMRYLRDC
LDDAEAADCGRCDRCAAPLFTAEVSPAALTTAQTFLGRPGVPLAPKKLWPTGLEAVGVPL
KGRIAPTEQALSGRAVGRLSDLGWGGRLRGLVGPGTPDGPLPDDLAAAVIEVLKAWAHGD
DPWPRRPAGVVAVDSRTHPVLVGSLAERIAAVGRLPLLGRVVSAGPPAGPRGNSAQRVRT
LHGALTLPEPLADALTGLDGPVLLVDDLVDSGWTMTMAARELRRAGAPDVLPLALAVAG
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atgagccaggaacggacgacgatccggcagcgggccgaggcggtgctgcggcggctggcg
ggcgaggacgcccggctccgggaggaccagtggcgggcgatcgaggcgttggtggtcgac
cgacggcgggtgctctgcgtgcagcgcaccggttggggcaagtcggcggtctacttcgtg
gccaccgcgctgctgcggcaggaggtggacggccgggagccggccgggcccaccgtgatc
gtgtcgccgctgctggcgttgatgcgtaaccaggtcgagtcggcggcccgggccggtatc
cgggcgcgcaccatcaactcggccaacctcgacgagtgggacgagatcaccggcgagatc
cacgccggtgcggtggacgtgctgctgatcagcccggagcggctcaacaatccggacttc
cgggacggcgtactgccgaggttggccgccaccaccggcctgttggtggtcgacgaggcg
cactgtgtgtcggactgggggcacgacttccggccggactaccggaggttgcggaccttc
ctcggcaacctgccggagcagacgccggtgctggccaccaccgccaccgccaacgagcgg
gtgacgcgggacgtggccgagcagctcggcaccgaggcggtcacgtcggggcggcagcga
ccggacgtcctcgtgctgcgcggcagcctggaccgggagtcgctgcggctgggcgtactc
gacctgccgagcccggcgcaccggctcggctggctcgccgaccacctggaccggctgccc
ggctccggcatcatctatacgttgaccgtggcgtcggcgaccgagaccgccgagttcctg
cggtcgcggggctggacggtggccgcgtacaccgggcaggccgaggacgccgaccgccgc
gccgccgagcaggacctgctcgacaacaagatcaaggcgttggtcgccaccagcgcgctc
ggcatgggcttcgacaagccggacctcggcttcgtggtgcacctgggcgcgcccccgtcg
ccgatcgcctactaccagcaggtcggccgtgccggccgcgcggtcgagcatgccgaggtg
ctgctgctgcccggtgtcgaggaccaggccatctggcggtacttcgcgtcgctcgccttc
ccgcccgaggaccaggtccgcgccgtgctggccgcgctgcacaccggccggccgctctcc
acccaggccctggagcccctggtcgacctgcgccgggcccggctggaactgatgctcaag
gtgctcgacgtggacggcgccgtccgccgggtgcgcggtgggtggctcgccaccggcgaa
acctgggtctacgacgagccccggttgcggcgcgtcgccgccgcccgcgccgacgagcaa
caggccatgctcgggtacgccgcgacgaccgactgccggatgcgctacctgcgggactgt
ctggacgacgcggaggcggccgactgtgggcgctgtgaccggtgcgccgcgccgctgttc
acggcggaggtgtcaccggccgcgctgaccaccgcgcagacgttcctgggtcgccccggc
gtgccgctcgcgcccaagaagctctggccgaccgggttggaggcggtcggcgtaccgctg
aagggccgcatcgccccgacggagcaggccctttccggacgggccgtgggccggctctcc
gacctcggctggggtggccggctgcgcggcctggtcgggccgggcacgccggacggcccg
ctgccggacgacctggctgccgccgtcatcgaggtgctcaaggcgtgggcgcacggcgac
gacccgtggccccgccgcccggcgggcgtggtcgcggtcgactcacggacccatccggtg
ctggtcgggtcgctggccgagcggatcgccgccgtcgggcggctgccgctgctgggccgg
gtcgtctcggccggtccgccggccggtccgcgtggcaacagcgcccagcgggtacgcacc
ctgcacggcgccctcaccctgcccgagccgctcgccgacgccctcaccgggctggacggc
ccggtcctgctcgtcgacgacctggtcgactcgggctggacgatgacgatggcggcgcgg
gaactgcgccgcgccggtgcccccgacgtcctgccgctggccctcgccgtcgccggctga
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