Verrucosispora sp. NA02020: HUT12_29330
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Entry
HUT12_29330 CDS
T06958
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ver
Verrucosispora sp. NA02020
Pathway
ver03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ver00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HUT12_29330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ver03019
]
HUT12_29330
03009 Ribosome biogenesis [BR:
ver03009
]
HUT12_29330
Enzymes [BR:
ver01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
HUT12_29330
Messenger RNA biogenesis [BR:
ver03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HUT12_29330
Ribosome biogenesis [BR:
ver03009
]
Prokaryotic type
rRNA processing factors
HUT12_29330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DUF5615
FakA-like_C
Motif
Other DBs
NCBI-ProteinID:
QKW16448
UniProt:
A0A7H8KHY2
LinkDB
All DBs
Position
complement(6556943..6559930)
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AA seq
995 aa
AA seq
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MLENEPEGGERTGANPAGETAETSTTGTAGSASPVAPDASEETSGTVSGAADLGSPSAAE
APPRRRATRRRATPVTQPEQIDAPVEASSDPAPGSSEAPQAEVFAPVSGDLDEAPKTPRR
RRKATTASKTAEEPLAVAEVEAADGDVVPPVKVTRTRRKKAAAPPAEVPAVVEEPVVEEP
APAAGTDFGAAALPPEGGAPVEETESDPAETVTPTEPEAEPAPEPRSRRRRAALSAPTVL
FMAPEEVTARAAAAAAAAAAPPVEEETPEEPAEPARRRRRGRREPEPEPAVEAEVEEEPA
AEADEADDEDEDGSGRRRRRRGRRGRGRGKGGAEDFDETDENEAEEAVQSDADETETESD
ESGDEGDGDGMTRRRRRRRRRGAGDTEGGADDGVPTVVKIREPRRTVDEVQGVSGSTRLE
AKRQRRRDGREQRRTRPPILSESEFLARREAVDRVMAVRQRGDRTQIAVMEDGVLVEHYV
TRNSAGTMAGNVYLGKVQNVLPSMEAAFVDIGRGRNAVLYAGEVNWDSTGLEGRARSIEQ
ALKSGDSVLVQVTKDPIGHKGARLTSHVALSGRHLVYVPGGNASGISRKLPDTERKRLRD
VLKKLVPDGAGVIVRTAAEGASEDELARDVKRLQAQWEDIQAKSTEGGAPVLLYEEPDLV
IRVVRDLFNEDFRELVIEGDQSYDMVESYLSHVSPDLVARLRRHVGTTDVFAAHRIDEQI
LKGLDRKVFLPSGGHLVIDRTEAMTVVDVNTGKYTGAGGNLEETVTRNNLEAAEEIVRQL
RLRDIGGIVVIDFIDMVLESNRELVLRRLTECLGRDRTKHQVTEITSLGLVQMTRKRIGA
GLLEAFSETCDCCKGRGLVIHTEPVPEKPRSGGPEKVKAVATATPAAEQTSGSSRRRGRK
GAAERTVVEVAETEETATATADADYHDTMGYDLSRYETDTPVAPDVADSQQGESARLAAP
DDPDALGESDEEEGAEGGTGRRRSRRGGARRRTRP
NT seq
2988 nt
NT seq
+upstream
nt +downstream
nt
atgctcgagaacgagcccgagggcggcgaacggaccggtgcgaacccggccggcgagacc
gctgagaccagcaccaccggcacggcgggcagcgcctcaccggtggcccccgacgcgtcg
gaggagacctccggcaccgtgagcggtgcggcggacctgggcagtccgtccgccgccgag
gcaccaccgcgcaggcgggccacccgtcgccgggccaccccggtcacgcagccggagcag
atcgacgccccggtcgaggcgtccagcgacccggcgccgggcagctcggaggcgccgcag
gcagaggtcttcgccccggtctccggtgacctggacgaggcgccgaagacgccccggcga
cgccgcaaggccaccaccgcgtcgaagaccgccgaggagccgctggccgtggccgaggtc
gaggccgccgacggggacgtcgtaccgccggtgaaggtgacccgtacccgtcgcaagaag
gccgccgcgccgccggccgaggttccggcggtggtcgaggagccggtggtcgaggagccg
gcacctgcggccggtaccgacttcggtgcggccgcgctgccccccgagggcggcgcgccg
gtcgaggagaccgagagcgacccggccgagacggtgaccccgacggagccggaggccgag
cccgcgccggaaccccgctcccgtcgacggcgtgccgcgctcagcgcgccgacggtgttg
ttcatggcgccggaggaggtcacggcccgcgccgccgccgctgcggctgctgcggccgca
ccgcccgtcgaggaggagacgcccgaggagccggcggagccggcccggcgccgtcgccgg
ggtcggcgcgagcccgagccggagcccgccgtcgaggcggaggtcgaggaggagcccgcg
gcggaggccgacgaggccgacgacgaggacgaggacggctcgggtcggcgtcgccgtcga
cgtggccgtcggggtcggggccggggcaagggtggcgccgaggacttcgacgagaccgac
gagaacgaggccgaggaggccgtccagagcgacgcggacgagaccgagaccgagtccgac
gagagcggcgacgagggcgacggcgacgggatgacccggcgtcggcgtcggcgccgccgc
cggggggccggtgacaccgaggggggcgccgacgacggcgtacccaccgtggtgaagatc
cgggagccgcgccgcacggtcgacgaggtgcagggcgtctccggttcgacccggttggag
gccaagcggcagcgccgccgggacggccgcgagcagcgccggacccgcccgccgatcctg
agcgagtcggagttcctggcccgccgcgaggcggtcgaccgggtgatggcggtacgccag
cgcggtgaccgcacccagatcgccgtcatggaggacggcgtgctggtcgagcactacgtc
acccgcaactcggcgggcaccatggccgggaacgtctatctcggcaaggtgcagaacgtg
ctgccgagcatggaggcggcgttcgtcgacatcggccggggccgcaacgccgtgctgtac
gcgggcgaggtcaactgggactccaccggcctggaggggcgggcccgctcgatcgagcag
gcgctcaagtccggcgactcggtgctggtgcaggtcaccaaggacccgatcgggcacaag
ggcgcgcggctgaccagtcacgtcgcgctctccggtcggcacctggtgtacgtgcccggc
ggcaacgcctccgggatcagccgcaagctgccggacaccgagcgcaagcgactgcgtgac
gtgctgaagaagctggtgccggacggtgccggcgtgatcgtccggaccgccgccgagggc
gccagcgaggacgagctggcccgtgacgtcaagcggctccaggcgcagtgggaggacatc
caggccaagtccaccgagggtggcgcgccggtgctgctctacgaggagccggacctggtc
atccgggtggtccgggacctgttcaacgaggacttccgcgagctggtgatcgagggcgac
cagtcctacgacatggtcgagtcgtacctgtcgcacgtctcgccggacctggtcgcccgg
ctgcgccggcacgtgggcaccaccgacgtgttcgccgcgcaccgcatcgacgagcagatc
ctcaaggggctcgaccgcaaggtcttcctcccctccggcggccacctggtgatcgaccgg
accgaggcgatgaccgtggtcgacgtcaacaccggcaagtacaccggggcgggcggcaac
ctggaggagacggtcacccgcaacaacctggaggcggccgaggagatcgtccgtcagctg
cggctgcgggacatcggcggcatcgtggtgatcgacttcatcgacatggtgctggagtcg
aaccgggagctggtgctgcgccggttgaccgagtgcctgggccgggaccgcaccaagcac
caggtcaccgagatcacctcgctgggcctggtccagatgacccgcaagcggatcggcgcc
gggctgctggaggcgttcagcgagacctgcgactgctgcaagggtcgcggcctggtcatc
cacaccgagccggtgccggagaagccacggtccggtggcccggagaaggtgaaggcggtc
gccacggccacgccggccgccgagcagacgagcggctcgtcgcggcgtcggggccgcaag
ggcgccgccgagcggaccgtcgtcgaggtcgctgagaccgaggagaccgccaccgccacg
gcggacgcggactaccacgacacgatgggctacgacctgtcccggtacgagacggacacg
ccggtcgccccggacgtggccgacagtcagcagggcgagtcggcccggctggccgctccg
gacgacccggacgcgctgggcgagagcgacgaggaggagggtgccgagggtggcaccggc
cgccgtcgctcccggcgtggtggcgcgcgccgccgtacccgaccctga
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