Verrucosispora sp. TAA-831: ACQVFL_15605
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Entry
ACQVFL_15605 CDS
T11182
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
vet Verrucosispora sp. TAA-831
Brite
KEGG Orthology (KO) [BR:
vet00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vet03016
]
ACQVFL_15605
Enzymes [BR:
vet01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
ACQVFL_15605
Transfer RNA biogenesis [BR:
vet03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
ACQVFL_15605
Prokaryotic type
tRNA splicing ligases
ACQVFL_15605
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
XUR93603
LinkDB
All DBs
Position
complement(3440525..3441724)
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AA seq
399 aa
AA seq
DB search
MGFSLLAGTRAPVRVWTDPYAIEPQAARQLRNIGALPWVQGVAVMPDVHYGKGATVGSVI
AMRQAVSPAAVGVDIGCGMSAVRTSLTAADLPDDLAGLRRAIEDAIPVGFAKHDEPVDPR
RIRGLEQRGWDDFWRGFADLDRRVQQLESRARRQLGTLGGGNHFIEVCLEQGGTEPGRVW
LMLHSGSRNIGKELAERHIAVARRLPHNADLPDRDLAVFLSGTPEMDAYRRDLWWAQEYA
RRNRAVMLAVLMNLVRDRFPHVGYDEPISCHHNYVAEEHYEGVDVLVTRKGAIRAGLGEL
GIIPGSMGTGSYIVRGGGNDWGYCSASHGAGRRMSRAQAKRTFSTADLAAQTAGVECRKD
AGVVDEIPGAYKDITEVMAQQQDLVEVVAHLKQVVCVKG
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atgggattcagcctgctcgcgggaacgcgggcgccggtacgggtctggaccgacccgtac
gccatcgagccgcaggccgcccggcagctccgcaacatcggggcgctgccgtgggtgcag
ggcgtcgcggtgatgccggacgtgcactacggcaagggcgccacggtgggttcggtcatc
gccatgcggcaggccgtgtcaccggcagcggtcggggtcgacatcggctgcggcatgtcg
gcggtccgcacctcgctgaccgctgcggacctgcccgacgacctggccgggctgcgccgg
gccatcgaggacgccattccggtcggcttcgccaagcacgacgagccggtggatccgcgc
cggatccggggcctggaacagcgtggctgggacgacttctggcggggcttcgccgacctg
gaccggcgggtgcagcagttggagtcacgcgcccggcggcagctcggcacgctcggcggc
ggcaaccacttcatcgaggtctgcctggagcagggcgggacggagccgggccgggtctgg
ctgatgctgcactccggctcgcgcaacatcggcaaggaactggccgaacggcacatcgcg
gtggcccgtcggctgccgcacaacgccgacctgcccgaccgggacctggcggtgttcctc
tccggtacgccggagatggacgcctaccgccgggacctgtggtgggcgcaggagtacgcg
cggcgcaaccgtgcggtgatgctcgccgtgctgatgaacctggtgcgggaccggttcccg
cacgtcggctacgacgagccgatcagttgccaccacaactacgtggccgaggagcactac
gagggggtggacgtgttggtgacgcggaagggcgcgatccgggcgggactgggcgagctg
ggcatcatccccggttcgatgggcaccggttcctacatcgtgcggggcggcggcaacgac
tgggggtactgctcggcctcgcacggcgcgggacggcggatgtcccgggcacaggcgaag
cggacgttcagcacggccgacctggcggcacagacggcgggggtggagtgccgtaaggac
gccggggtggtggacgagatccccggtgcgtacaaggacatcaccgaggtgatggcacag
cagcaggacctggtcgaggtggtcgcccacctcaagcaggtggtctgcgtcaagggatga
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