Vibrio europaeus: IXK98_00350
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Entry
IXK98_00350 CDS
T07114
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
veu
Vibrio europaeus
Pathway
veu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
veu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IXK98_00350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
veu03019
]
IXK98_00350
Enzymes [BR:
veu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
IXK98_00350
Messenger RNA biogenesis [BR:
veu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IXK98_00350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
P-loop_SecA
Helicase_C_2
Motif
Other DBs
NCBI-ProteinID:
QPG34213
LinkDB
All DBs
Position
2:complement(63671..64930)
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AA seq
419 aa
AA seq
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MSTQFEALGLCSTLTQTTDKLGFSQPTEVQAQAIPHVLEGEDVLAGAQTGTGKTAAFGLP
ILHKLLASDVKRDPQSNDVLALVLVPTRELAQQVYDNLVQYAQETAIKIVTAYGGTSMNV
QTRNLREGCDILIATPGRLLDHMFCKNINLFKTQYLVLDEADRMLDMGFMPDIKRILKRC
NEDRQTLFFSATFDKRIKTIAYKMLNEPVEVQVTPSNSTAETVKQMVYPVDKKRKAELLA
YLIGSRNWQQVLVFTKTKQGSDALAKELKLDGIKAASINGDKSQGARQKALDDFKSGQIR
ALIATDVAARGLDIQQLEQVVNFDMPYKAEDYVHRIGRTGRAGKEGFAVSLMSRDEEYLL
EAIERLLDSKLPQEWLQGFEPSLIEEVEPEKTPHRRGRNSDKRKMKAKLKVHANRGKRK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacacaatttgaagcattagggctttgctcaacacttacccaaactactgacaaa
ctcggttttagccaaccaaccgaagtacaggctcaggctattccacatgttcttgagggt
gaagatgtccttgctggtgcccagaccggtacgggtaaaactgcggcctttggtttgcca
atattgcataagctactggcatccgatgttaagcgtgatcctcaaagcaacgatgttctc
gctctggtcctggttcctacccgtgagttagctcaacaggtatacgataacttagttcaa
tatgcgcaagagacggcaataaaaatcgtcactgcctatggtggtacgagcatgaacgta
cagactcgtaacctgagagagggttgcgatattctgattgctactcccgggcgtctgctc
gatcatatgttctgcaaaaacatcaacttgttcaaaacgcaatacttagtactggatgaa
gcagaccgaatgttggatatgggctttatgccagatattaaacgcatccttaagcgctgt
aatgaagatcgtcaaacgctgttcttttctgcaacctttgataaacgaatcaaaactatc
gcgtataaaatgctgaatgagccggtagaagttcaagtaaccccttccaacagtactgcc
gaaacagtaaagcagatggtgtatccggttgataaaaagcgcaaagcggaactgttggcg
tacttaattggctcaagaaattggcaacaagtgctagtgtttacaaaaaccaagcaaggg
agtgatgcactcgcgaaagagcttaaacttgacggcatcaaagcggcttcgatcaatggc
gataaaagccaaggagcacgtcagaaagcactggatgactttaagtcaggccaaattcga
gcacttattgccaccgatgtggccgctcgaggtctcgatattcagcaacttgagcaggtc
gttaatttcgatatgccatacaaagcggaagactacgttcatcgtatcggtcgaactggt
cgcgctggaaaagaaggattcgcagtatctttaatgagccgcgatgaagagtatctactt
gaagcaatagaacgcttattggacagtaaactgcctcaagaatggctacaaggctttgag
ccgagcttgatcgaagaagtcgaaccagaaaaaacgcctcatcgtagaggtcgtaattca
gacaagcgaaaaatgaaggcgaagcttaaggttcacgccaatcgtggtaaaagaaaatag
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