Vibrio europaeus: IXK98_05975
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Entry
IXK98_05975 CDS
T07114
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
veu
Vibrio europaeus
Pathway
veu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
veu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IXK98_05975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
veu03019
]
IXK98_05975
03009 Ribosome biogenesis [BR:
veu03009
]
IXK98_05975
Enzymes [BR:
veu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
IXK98_05975
Messenger RNA biogenesis [BR:
veu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IXK98_05975
Ribosome biogenesis [BR:
veu03009
]
Prokaryotic type
rRNA helicases
IXK98_05975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
WSD
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
QPG33672
LinkDB
All DBs
Position
2:complement(1281907..1283850)
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AA seq
647 aa
AA seq
DB search
MTDSVIQFSDLALNDSILSALDGMGFVSPTPIQAAAIPHLLAGRDALGKAQTGTGKTAAF
SLPLLNKLDLAQRKPQAIVLAPTRELAIQVAAEVKNLGQNIAGLKVLEIYGGASIVDQMR
ALKNGAHIVVGTPGRVQDLINRDRLHLDEVHTFVLDEADEMLNMGFVDDVTEIMEHAPSS
AQRVLFSATMPPMLKSIVERFLRDPETVDVAGKNHTVDKVEQQFWVVKGVEKDEAMSRLL
ETEETDASIVFVRTRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQGVIDILV
ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQLRMLRTI
ERVTKSSMEEIQLPHRDKVAEARVAKLGAELEADKEHKALEKFSELVEKLQESLELDAAT
LAAILLKRQQGKRPLFYIGEDPMIEAIERDKQRRKERREGGRDGRDGRGRDRNFNNQDWD
TYQLQVGREQGVQVKDIVGALANELGLVKGSIGAIKLAQGETYVQLPKAMSSETANKLRK
LRIRQKEVGAVVCDFDDFREPRGRRDGGRRDGGGYRGNRDGNREGGYRGNRDGNREGGGY
RGNREGGRGNREGGRRDGERRFDRNRGGDHRGNYRGERGHGRGNRED
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atgacagattctgtaattcagtttagcgatctagcgcttaacgactctatcctttcagct
cttgatggtatgggttttgtttcaccaactccaattcaggctgctgctatcccgcaccta
ttggctggtagagacgcactaggtaaagctcaaactggtactggtaaaactgcagctttc
tctctacctcttctaaacaagctagaccttgcacagcgtaagcctcaagcaatcgtactt
gctccaactcgtgaactagcgatccaagtagcggctgaagttaaaaacttaggtcaaaac
atcgctggtcttaaagttcttgagatctacggtggtgcatcgattgttgatcaaatgcgc
gcactgaaaaacggtgctcacatcgttgttggtactccgggccgtgttcaagaccttatc
aaccgtgatcgtctacacctagacgaagtacacacattcgttcttgatgaagcggatgag
atgcttaacatgggcttcgttgatgacgtaactgaaatcatggagcacgcgccttcatca
gcacaacgtgtactattctctgcgactatgcctcctatgcttaagagcattgttgagcgt
ttcctacgtgatccagaaacggtagacgttgcaggtaaaaaccacactgtagacaaagta
gagcagcagttctgggttgttaaaggtgtagaaaaagacgaagcaatgtctcgtcttctt
gaaactgaagagactgacgcgtcaatcgtattcgtacgtactcgtcaagatactgagcgc
ctagcagattggctatgtgcacgtggcttcaaggcatctgcactacacggtgacattcct
cagtctctacgtgagcgtactgttgatcacatcaaacaaggtgttatcgacattctagtt
gcaactgacgttgtagcacgtggtctagacgttccacgtatcacgcacgtattcaactac
gacattccattcgatgttgagtcttacatccaccgtatcggccgtacaggtcgtgctgga
cgtaaaggtaaagcgatccttctagttcgcactaaccaactacgtatgcttcgcactatt
gagcgtgtaactaagtcatcaatggaagagatccaacttccacaccgtgacaaagttgca
gaagctcgcgttgcaaaacttggtgcagagcttgaagcagataaagaacataaagcacta
gagaaattctcagagttagttgaaaaactacaagaatctctagagctagacgcggcaaca
ctggctgccattcttcttaagcgtcagcaaggtaagcgcccactattctacattggcgaa
gacccaatgattgaagcgattgagcgtgacaagcagcgtcgtaaagaacgtcgtgaaggc
ggccgtgatggtcgtgatggtcgtggtcgtgaccgcaacttcaacaaccaagactgggat
acataccagctgcaagttggtcgtgagcaaggtgttcaggttaaagacatcgttggcgca
ttggcaaacgagcttggcctagttaaaggttcaatcggtgcgattaaactagcgcaaggc
gaaacttacgttcagctaccaaaagcaatgtcttctgagacagctaacaagctgcgtaaa
ctacgcatccgtcagaaagaagttggcgcagtagtatgtgactttgatgacttccgtgag
cctcgtggtcgtcgtgacggtggacgtcgcgatggtggcggttaccgtggtaatcgtgat
ggaaaccgcgaaggcggctaccgtggtaaccgtgacggaaaccgcgaaggtggcggctac
cgtggcaaccgtgaaggcggtcgtggtaatcgcgaaggtggtcgtcgtgatggcgagcgt
cgctttgaccgtaaccgtggtggcgatcaccgtggtaactaccgtggcgaacgtggccat
ggtcgtggtaaccgcgaagattaa
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