Vibrio europaeus: IXK98_05980
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Entry
IXK98_05980 CDS
T07114
Symbol
rnb
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
veu
Vibrio europaeus
Brite
KEGG Orthology (KO) [BR:
veu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
veu03016
]
IXK98_05980 (rnb)
Enzymes [BR:
veu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
IXK98_05980 (rnb)
Transfer RNA biogenesis [BR:
veu03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
IXK98_05980 (rnb)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
Rho_RNA_bind
Motif
Other DBs
NCBI-ProteinID:
QPG33673
LinkDB
All DBs
Position
2:1284315..1286318
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AA seq
667 aa
AA seq
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MFQDNPLLAQLKQQIQETLPKKEGTIKATEKGFGFLEVDSKTSFFIPPPYMKKCMHGDKV
KAIIRTEKEREQAEPEELLEQGLNRFIGRVKLFKGKLNVTPDHPQLKKLSLKAKTRKGIK
SDDLKEGDWVVAHLIRHPLKGDNGFFVEISDKITDADDKIAPWWVTLAQNDLPNSEPAGL
DSWELKDDADLVRTDMTQVPFVTIDGESTKDMDDALHAKKTESGDFELTIAIADPTAYIT
PDSDMDKVARERGFTIYLPGRNIPMLPRDLADDLCSLIEGEARPALCCSVTVTKEGVIGD
DIKFFAANIKSHARLAYDHVSDWIENGSSDAWQPNEEIAEIVRDLYDFSRVRAEWRETHA
VVFPDRPDYRFELSEDNDVVAIHADMRRSANRLVEEAMITANICAGKTLQSSFNSGVFNT
HAGFKPEKIEDVVNLVNPEGELPFTAESIATLEGFAALRRWLGSQETSYLDNRIRKAQAY
SEMGNQPLPHYAMGLDLYATWTSPIRKYGDMINHRMLKAHILGKEPVQTADDSVGEELAL
HRKHHKIAERNVGDWLYARTLADEPAKETKFNGEIFDINRAGMRIRLIENGAAAFIPGSL
ILANKERLECNGENGTVSIDKEVTYRLGDVLEVVLTDVNQENRSLVAKPTQIFEEVKTTT
EAETSAE
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagataaccctctactggctcaacttaagcagcaaatccaagaaaccctgcct
aaaaaagaaggcacaatcaaagcgacagagaaaggctttggtttccttgaagtggatagt
aagacaagcttctttatcccacctccgtacatgaaaaaatgtatgcacggcgacaaggta
aaagcgatcattcgtacagaaaaagagcgcgagcaagctgaaccagaagagctacttgaa
caagggcttaaccgttttattggccgagttaaactattcaaaggcaaactgaacgttacg
ccagaccatcctcaacttaaaaagttatctttaaaagctaagacacgtaaaggcattaag
agtgatgatcttaaagagggtgattgggtggttgcacaccttattcgtcatccacttaag
ggtgataatggcttctttgtcgaaatcagcgacaaaattactgatgcagacgacaagata
gcaccttggtgggtaacgttggcgcaaaacgatttgccaaatagcgaaccagcaggacta
gatagctgggagctaaaagacgacgctgatcttgtacgcaccgatatgacacaagttccg
tttgtgaccattgatggtgagtcaaccaaagatatggatgacgcgctgcatgctaaaaag
acagaatcaggtgattttgaactgacgattgcgattgctgatcctacagcctacatcaca
cctgacagtgatatggataaggtggcacgcgaacgtggttttaccatctatctaccgggt
agaaatattccaatgcttccgcgcgacctcgccgatgacttatgttcattgattgagggg
gaagcacgcccagctctatgttgtagtgtgaccgtgacgaaagaaggtgttatcggcgat
gacattaagttctttgctgccaacattaaatctcatgctcgcttggcttacgaccatgtt
tccgattggattgaaaatggtagctcagatgcttggcaaccaaatgaagaaatcgctgag
atcgttcgtgacctgtatgacttctcacgtgttcgtgctgagtggcgtgaaactcacgca
gtcgttttccctgaccgtccagactaccgatttgaactgagtgaagataacgatgttgtc
gctattcatgccgacatgcgtcgtagcgctaaccgcctagtagaagaggcgatgattaca
gcaaacatttgtgcgggtaaaacgctgcaatcaagctttaattcaggtgtgtttaacact
cacgcaggttttaaaccggaaaagattgaagatgtcgtcaatctggtaaatccagaaggt
gaactgccgtttaccgctgaatctatcgcgactctagaagggtttgcggcgctgcgtcgt
tggttgggaagtcaagaaacttcttacctagataaccgaatccgcaaagctcaagcttac
agtgaaatgggtaaccagcctctaccgcactatgcaatgggtcttgacctatacgcgacg
tggacgtcaccaattcgcaaatatggcgatatgatcaaccaccgtatgcttaaagcgcac
atcttaggcaaagaaccagtgcagactgccgatgacagtgtcggtgaagagctagcgctt
catcgcaagcaccacaagattgctgagcgcaatgttggtgattggctatatgctcgtacc
cttgcagacgaacctgctaaagagactaagttcaacggtgagattttcgatatcaaccgt
gctggtatgcgtatccgcttgattgaaaatggcgctgcggcatttatcccaggctcactc
atcttagccaacaaagagcgcctagagtgcaatggtgaaaatggtacggtttcaatcgat
aaggaagtgacttaccgcttaggtgatgtgctagaggtggttctgactgacgtaaatcag
gaaaaccgcagcctagtagctaaaccaacacaaatctttgaagaagtgaagacaacgaca
gaagctgaaacctcagcagagtaa
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