Vibrio europaeus: IXK98_09825
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Entry
IXK98_09825 CDS
T07114
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
veu
Vibrio europaeus
Pathway
veu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
veu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IXK98_09825 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
veu03019
]
IXK98_09825 (rnr)
03016 Transfer RNA biogenesis [BR:
veu03016
]
IXK98_09825 (rnr)
Enzymes [BR:
veu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
IXK98_09825 (rnr)
Messenger RNA biogenesis [BR:
veu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
IXK98_09825 (rnr)
Transfer RNA biogenesis [BR:
veu03016
]
Prokaryotic type
tRNA degradation factors
IXK98_09825 (rnr)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
WHD_RNase_R
S1
RNase_II_C_S1
Rho_RNA_bind
Motif
Other DBs
NCBI-ProteinID:
QPG36662
LinkDB
All DBs
Position
1:272693..275152
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AA seq
819 aa
AA seq
DB search
MSDNIHNDPFAARESENYENPIPSREFILEFLSQAGVPMNRNDLFEALKLKGEDHYEGLR
RRLRAMERDGQLVFTRRQCYALPEKLEMVKGYVIGHKDGHGWVRPEGSVGKDNDIVLPHH
QMKNIIHGDFVLVQPTENSKRGRKEGRLVRVLEERVTQIVGRFFMEYGYSYVVPDDSRIS
QDILIPNDLRAGARMGNVVVIEITDRGSRSRGMMGKVIEVLGENMAPGMETQIAIRTHQI
PHEWPEAVDKQIEGLGEEVPEEAKVGRVDLRELPLVTIDGEDARDFDDAVFCEKKKSGGW
RLWVAIADVSYYVRPDSALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCM
VCEMTISETGKLSGYKHYEAVMNSHARLTYNKVHHILEGDEELRQRYEPVVPHLEELHKM
YKVLKHARDNRGAIEFETVETKFIFNAERKIDSIEPVIRNDAHKIIEECMILANIASASL
VEKAKEPALYRIHESPGELRLQGFRDFLGELGLHLNGGLEPSPTDYADLVKQIGERQDKE
LIQTMLLRSMKQAVYNADNCGHFGLALKRYAHFTSPIRRYPDLLLHRAIKYLIAKENGTL
KDRWTPTGGCHYSFDDMDFYGEQCSMTERRADDATREVSDWLKCEYMQDHVGEELDGVIA
NVTGFGFFVRLSDLHIDGLVHISALANDYYQFDPIGQRLIGESFGAIYRLGDAVKVKVLS
VNLDDRQIDFELVETSRKLRGEGKTAKKRAAEAKRKAKEKKRAATKGGKAGRKASPDVEP
TKRPEPSESRAGNKPKVTKARKKKPGAKPKKTKRTKKAE
NT seq
2460 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacaatatccataatgacccttttgcagctcgtgaatcggaaaattatgaaaac
ccgatcccaagccgtgagtttattcttgagttcctcagccaagctggcgttccgatgaac
cgcaatgatctctttgaagctttaaagctgaaaggagaagatcattatgaaggcttacgt
cgtcgactgcgcgccatggagcgtgacgggcaactggtattcactcgccgtcaatgctac
gcgttaccagagaaactggaaatggtgaaaggctatgtgattggtcataaagatggtcat
ggctgggtacgtcctgaaggaagcgtcggcaaagataacgacatcgtacttcctcatcac
caaatgaaaaacatcatccatggtgattttgtcttagttcaacccactgagaactcaaaa
cgaggccgtaaagaagggcgcctagttcgtgttcttgaagagcgcgtgacgcaaatcgtt
ggccgcttctttatggaatatggttactcatatgtagtgccagatgactcgcgtataagc
caagacatcttgatcccgaatgacctacgtgcaggggcgcgtatgggtaacgtggtggtg
attgaaattaccgatcgtggttctcgctctcgcggcatgatgggtaaagtcattgaagtc
cttggtgagaacatggcacccgggatggagacgcaaattgctatccgcacacaccaaatt
cctcatgaatggcctgaagccgttgataagcaaatcgaaggcttgggtgaagaagtgccg
gaagaggcaaaggtcggtagggtagacctacgtgaactgccactagtgacgattgatggt
gaagatgctcgcgacttcgacgatgctgttttttgtgagaaaaagaaaagcggtggttgg
agactttgggttgctattgctgacgtcagctattacgttcgcccagacagtgcactggat
aaagaagcgattaaccgcggtaactcggtttacttcccatcgcaagtggttccaatgctg
ccagaagtattgtctaacggcctgtgctcgcttaacccacaagtcgatcgcctctgtatg
gtatgtgagatgaccatctctgaaacgggtaaattatctggctacaagcactacgaagcc
gtaatgaactctcatgctcgcctgacttataacaaggtacaccatatccttgaaggggat
gaagagctgcgccaaagatacgagccggttgttcctcacctcgaagagctgcataagatg
tacaaagtgctcaagcatgctcgtgataatcgtggtgcgattgaatttgaaacggtagaa
accaagttcattttcaatgcggagcgcaagattgacagcattgaacctgtgattcgcaac
gatgcgcataagattattgaagagtgtatgattttagccaatatcgcttctgcttctttg
gtcgaaaaagcaaaagaaccggcactctaccgaattcacgaatctccgggtgaactacgt
ctgcaaggcttccgtgacttcttgggtgagctaggtctgcacttaaatggtggtttagag
ccatcgccaaccgattacgctgacctagttaagcaaattggcgagcgtcaagacaaagag
ctgattcaaaccatgctgttgcgttcgatgaagcaagcggtctacaacgcagacaactgc
ggccactttggcttggcactaaaacgctacgcgcactttacctcgccaatccgtcgctac
ccagacttgctattgcaccgcgcaattaaatatctaattgccaaagaaaatggcacgctg
aaagatcgttggacaccaaccggtggttgccactattcatttgatgatatggacttctac
ggtgagcaatgctctatgactgagcgccgcgccgatgacgcgacccgcgaagtctctgat
tggctcaaatgtgaatacatgcaagaccatgttggtgaagagctcgatggcgtcattgcc
aatgtcactggttttggtttctttgttcgccttagtgatctgcatattgatggtttagtg
catatttcagcgcttgcgaatgactactatcaatttgaccctatcggtcagagacttatc
ggtgaaagctttggtgctatttatcgattaggtgatgcagtgaaagttaaagtgctttcc
gttaatctcgatgatcgccaaattgactttgaattagtcgaaacaagtcgtaagctacgc
ggcgaagggaagacggctaagaagcgcgcggcagaggcaaaaagaaaagccaaagagaaa
aaacgtgctgcaaccaaaggtggtaaagcaggccgtaaagccagccctgacgttgaacca
accaaacgtccagagccatcagagtcgagagcaggcaataagccaaaagtgaccaaagcg
cgtaagaaaaagccgggcgcaaaacctaagaaaaccaagcgtactaagaaagctgagtag
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