Vibrio europaeus: IXK98_19040
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Entry
IXK98_19040 CDS
T07114
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
veu
Vibrio europaeus
Pathway
veu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
veu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IXK98_19040 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
veu03019
]
IXK98_19040 (rne)
03009 Ribosome biogenesis [BR:
veu03009
]
IXK98_19040 (rne)
Enzymes [BR:
veu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
IXK98_19040 (rne)
Messenger RNA biogenesis [BR:
veu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
IXK98_19040 (rne)
Ribosome biogenesis [BR:
veu03009
]
Prokaryotic type
rRNA processing factors
IXK98_19040 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QPG35560
LinkDB
All DBs
Position
1:2274821..2277772
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AA seq
983 aa
AA seq
DB search
MKRMLINATQKEELRVALVDGQRLYDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPEGYTYQGRPSIKEVLTEGQEVIVQVEKEERGSKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLELPQGMGLIVRTAGVGKSAEEL
EWDLNVLLNHWGAIKQASDSNTAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNTIYERA
LDHIRLIRPDFVSRVKKYDGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSARATKGGDIEETALNTNLEAAEEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEN
RLRDSVRMDRARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCSGTGVVRDNESLAL
SVLRLIEEEALKDNTAQVLAVVPVPIASYLLNEKRRSVNHIERIQEVKITVVPNSDMETP
HFDVIRVREGEEFDLLSYLLPNKLEAMKEAEGKELAVETEAKPKKIEEPALKGFASPSNS
APAPAKPAPKAPEKKKEPQEPQEGLVSRFFKALGGFLFGSAKEEEKQEEQKPKEHKEGNR
NNRNRRNRNDNRRRGNRDNRNDNREDKRDNKRKNTRDEAATEAKPNERKQQNRKPKQDRR
NKRDEAKPSKVAEEGLKLAADAQQGDKPEARKERAEEKAAKVKERRQRRKLSKQVRVKDQ
AAKAQADEEAKQVAVEAKAEAVEEKALDTEADNAEEQPKQRRNRRSPRHLRASGQRRRRG
RDRRPNPFRLRKGGVASPEMAMGKVMPSYGITKPAPKQQSKADKVKAPVETTVASLGGFA
CPEMAMGKVIVRREQPVIEEPVQETVVATQPEQVEVAQAAVITEPVEVVAETVERPVQAE
AEVEATDVKQPTEEVAAESSDIVVAQSFKGHASAAMAKAPGSTEMKEITVVAAPFKAQRY
ESRGAGSQVARNQAGATMTKPQF
NT seq
2952 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaattaacgcaactcaaaaagaagagttgcgtgttgctttggttgat
ggtcagcgcttatatgatttggatatcgaaagccctggacatgaatctaaaaaagcaaat
atctacaaaggacgtatcacacgcatcgaaccaagcctagaagcggcttttgttgactac
ggtgcagaaagacacggtttcctccctcttaaagaaattgcccgcgaatacttccctgaa
ggttacacctaccaaggccgtcctagcattaaagaagtgctaactgaaggtcaagaagta
atcgtacaagtagagaaagaagaacgtggtagcaagggcgcagctctaactacgtttatt
tctcttgcgggtagttaccttgttcttatgcctaacaaccctcgtgccggtggtatttct
cgccgtatcgaaggcgacgagcgtactcaacttaaggcagctctgagtacattagaacta
cctcaagggatgggtttgatcgtacgtactgcaggtgttggtaaaagtgctgaagagcta
gagtgggatttaaacgtacttctgaaccactggggcgcaatcaagcaagcttctgactca
aacactgcacctttcttgattcaccaagaaagtaacgtgattgttcgtgcaattcgtgac
tacctacgtcgcgatattggcgaaatccttatcgacagcaacacaatttacgagcgcgca
ctagaccatatccgcctaattcgtcctgatttcgtaagccgtgtgaagaaatacgatggt
gaagtaccactgtttagccactaccagatagaaagtcagatcgaatccgcgttccaacgc
gaagttcgcctgccttctggtggttctatcgttatcgacccaacagaagccctaacttct
atcgatatcaactctgcccgtgcaactaagggtggcgatatcgaggaaaccgctttaaac
accaacctagaagcggcagaagaaattgcacgtcaacttcgcctgcgtgacttgggtggt
ctggtggttattgacttcatcgatatgacgccagttcgtcaccaacgtgaagttgaaaac
cgcttacgtgattctgttcgtatggatcgcgctagagtacaaattggtcgaatttctcgt
tttggcctattagaaatgtctcgtcagcgtctaagtccgtcactagcagaagcgagtcac
cacatctgtccacgttgtagtggtactggtgttgttcgtgacaacgaatctctggcactt
tctgtacttcgcttgatcgaagaggaagcactgaaagacaacacagcgcaagttcttgct
gttgtgcctgtgccgattgcttcttacctgcttaacgaaaaacgtcgttcggttaaccat
attgagcgtatccaagaagttaagatcacagttgtaccaaactcagacatggaaacaccg
catttcgatgtgattcgtgtccgcgaaggcgaagagttcgacctactttcttacctactt
cctaacaagctcgaagcgatgaaggaagctgaaggtaaagagctagcagttgaaactgaa
gccaaacctaagaaaattgaagagcctgctctaaaaggctttgcgtctccaagcaactct
gctccagcgcctgccaaaccggcgcctaaagcacctgagaagaagaaggaaccacaagaa
cctcaagaaggtcttgttagccgcttcttcaaagctctaggtggcttcctatttggttct
gccaaagaagaagagaagcaagaagagcaaaaaccgaaagagcataaagaaggtaaccgc
aacaaccgcaatcgtcgtaaccgtaacgataaccgccgtcgtggcaatcgtgacaaccgc
aacgataaccgtgaagacaaacgcgataacaagcgtaagaacacacgtgatgaagcggca
actgaagccaaacctaacgaacgcaaacagcaaaatcgcaaacctaagcaagatcgccgt
aataagcgtgacgaagctaaacctagcaaggtagctgaagaaggtcttaagttagcggct
gacgctcagcaaggcgacaaacctgaagcacgcaaagagcgcgcagaagagaaagcggca
aaagtcaaagagcgccgtcaacgccgtaagttgtctaagcaggttcgagttaaagaccaa
gctgcaaaagctcaagctgatgaagaagcgaagcaagttgcggtagaagctaaagcggaa
gctgttgaagaaaaggcactggatactgaagcagataacgccgaagaacagccgaaacaa
cgccgcaatcgtcgttctccacgtcacctacgtgcaagtggtcaacgtcgccgtcgtggt
cgtgatcgtcgccctaacccattccgcctacgtaaaggtggtgttgcatctcctgaaatg
gcgatgggtaaagtgatgccaagttacggtattactaaacctgcaccaaagcagcaatca
aaagctgacaaggtaaaagcgcctgtagagactacagtggcttcattaggtggttttgca
tgtccagaaatggcgatgggtaaagtaattgttcgtcgtgagcagcctgtcattgaagag
cctgtacaagaaactgtagtggcaactcaacctgagcaggtagaagtagcacaagcggca
gttatcactgaacctgttgaagtggttgctgaaaccgttgagcgaccagttcaagctgaa
gcagaagttgaagcaactgacgttaagcagcctactgaagaagtagccgctgagtcatct
gacatcgttgttgcacagagctttaaaggtcacgcatcggcagccatggcaaaagcacct
ggcagcacagagatgaaagagatcactgtagtagcggcaccttttaaagcgcagcgctat
gaatctcgcggtgctggtagccaagttgctcgcaaccaagcaggcgcgacaatgactaag
cctcagttttag
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