Vibrio europaeus: IXK98_20610
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Entry
IXK98_20610 CDS
T07114
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
veu
Vibrio europaeus
Pathway
veu03030
DNA replication
veu03430
Mismatch repair
veu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
veu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IXK98_20610 (dnaE)
03430 Mismatch repair
IXK98_20610 (dnaE)
03440 Homologous recombination
IXK98_20610 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
veu03032
]
IXK98_20610 (dnaE)
03400 DNA repair and recombination proteins [BR:
veu03400
]
IXK98_20610 (dnaE)
Enzymes [BR:
veu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
IXK98_20610 (dnaE)
DNA replication proteins [BR:
veu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
IXK98_20610 (dnaE)
DNA repair and recombination proteins [BR:
veu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
IXK98_20610 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
QPG35838
LinkDB
All DBs
Position
1:complement(2589892..2593371)
Genome browser
AA seq
1159 aa
AA seq
DB search
MSDPKFIHLRVHSDFSMVDGLSKVPPLVKKVAELGMPAMALTDFTNLCGLVKFYGTAHGC
GIKPIIGADFVMQSPEFGDELTKLTVIAADNVGYKNLTLLISKAYLRGHVQHQPVIDKEW
LVELSEGIIILSGAKSGEIGRALLKGNQKVVEQCVEFYQTHFPDRFYLELVRTGRADEET
YLHFALELAEQHDLPVVATNDVVILDETLFDAHEIRVAIHDGYTLEDPRRPKNYSAQQYL
RTEEEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPAFPTEGMEETEFLVKKSEEGL
EDRLEFLFPDPAVRVERRPEYDDRLKIELEVINNMGFPGYFLIVMEFIQWSKDNAIPVGP
GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE
MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHGFGFVDRISKLVPPDPGMTLEKAFKAEPA
LPELYENDEEIKELIDMCRILEGCTRNAGKHAGGVVISPTTITDFAPIYADAEGHFPVTQ
FDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEKEGKDPIAIESIPLEDQASFNLL
QNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREA
VSYPDEQWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM
AKQRATFEEGAVANGVGGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHFPA
EFMAAVMTADMDNTEKVVGLVDECFRMKLKVLPPDINAGLYRFNVDEDGAIVYGIGAIKG
VGEGPIDAILEARNKDGHFKDLFDFCARIDLKKVNKRVIEKLIYAGALDRLGPHRAAMMA
SLNDAVKAASQHHQAEAFGQSDLFGVLTEAPEEVEHKYTKAEPWPEKVWLEGERDTLGLY
LTGHPINAYIKELGKYTSCRLKDATPTRRDQSVTVAGLVIAARVMTTKRGTRIGIMTLDD
RSGRMEVMLFSDALDRYAELLEKDKILVVSGQVSFDDFNGGLKMSAREVMDLGTAREKYA
RGLSVSIDQSQINDRFFERFSQILEPHRAGSVPVHVYYQRSDARARLTLGTEWRVTPSDA
LLDDLKQLLGKGQVELEFN
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaccctaagtttatccaccttcgagttcatagtgacttttccatggtcgatggc
ctttcaaaagtgccacccttggttaagaaagtggctgagttgggcatgcctgcgatggcg
ctgactgactttaccaacttatgtggtctagtgaagttttatggcacggcccacggttgt
ggtatcaagccgatcataggcgctgacttcgtgatgcagtcacctgagtttggtgatgag
ctgactaagctgaccgtgattgcagcagataacgtcggttataagaatctgactttactg
atctcaaaggcctacctacgaggccacgttcagcatcaaccagtgattgataaagagtgg
ttggttgagctttcagaagggataatcatactttctggggctaagagtggggaaataggc
agggcactactgaaaggcaaccagaaagtcgtcgagcagtgtgttgagttctaccaaacc
cattttcctgaccgtttttacctcgaattagttcgtactggcagagcggatgaagaaacc
taccttcactttgcgttagagctagcagagcaacatgacctgccagttgttgccaccaat
gatgtcgtgattcttgatgagacactgtttgatgcgcatgagattcgtgttgcgattcat
gatggttatacgctagaagatccccgtcgaccaaaaaactacagcgctcagcaatatctt
cgtactgaagaggagatgtgcgagctattctcagatatccctgaagcattagaaaatagt
gtagagattgctaagcgttgtaacgtaacagtccgcttgggtgaatacttcctgcccgcg
ttcccaaccgaagggatggaagaaactgagttcttggttaaaaaatctgaagaaggtctg
gaagatcgactagaattcttgttccccgatccggcggtgcgtgtagaaagacggcctgaa
tacgatgatcgtcttaaaattgaactggaagtaatcaataacatgggattcccaggttac
ttcttgatcgtaatggagttcattcagtggtcaaaagataatgccatccctgtaggtcct
ggccgtggttcaggtgccggttctttggtggcatacgcgttaaaaatcactgatctcgac
ccactagaatacgatcttctgtttgagcgattcctcaaccctgaacgtgtttccatgccc
gatttcgatgtcgacttctgtatggataaacgcgaccaagtaattgatcacgttgcagaa
atgtatggtcgtgatgcggtatcgcagatcatcactttcggtactatggcagcgaaggca
gtaattcgtgacgtaggccgtgtacttggtcatggtttcggttttgttgaccgcatctcg
aaactggttccaccagatccgggcatgacgctagaaaaagcattcaaagcagaacctgct
ttacctgagttgtacgaaaacgacgaagaaattaaagagctgattgatatgtgtcgcatc
cttgaagggtgtacacgtaatgcaggtaagcacgctggtggtgttgtaatatcgccaacc
actattactgactttgcgccgatttatgctgatgcggaaggtcacttcccggtgactcag
ttcgataaaaacgacgttgaaaccgcgggtctggttaagtttgacttcttgggcttacgg
acgctgaccattattgactgggcactgggcttgattaacccacgcttagagaaggaaggc
aaagaccctatcgccattgagtctatcccattggaagaccaagcttccttcaatctgctg
caaaactcagaaaccaccgcggtattccagcttgaatcgcgtggtatgaaagagctgatc
aaacgccttcagcctgactgttttgaagatattatcgcactagttgctctgttccgtccg
gggccgcttcagtcaggcatggtagataactttatcgaccgtaaacatggacgcgaagcg
gtttcttacccagacgaacagtggcagcacgaatcgctgaaagagattctagagccaact
tacggcattatcctctatcaggagcaggtaatgcagatcgctcaggttctttctggctat
acgctgggcggcgcagacatgcttcgtcgtgcgatgggtaagaaaaagccagaagagatg
gccaagcagcgtgcgacgttcgaagaaggcgcggtcgccaacggcgtaggcggcgaattg
gcgatgaagatcttcgacttggtagaaaagttcgcaggttacggcttcaacaaatcgcac
tcggctgcatatgctctggtttcttaccaaacgctgtggctcaaaactcatttcccagcg
gaatttatggctgcggtaatgactgccgatatggataacactgagaaagtcgtcggtctg
gttgatgagtgtttccgcatgaagctcaaagtgctgccaccagatatcaacgcaggtttg
tatcgctttaatgtcgatgaagacggagcgattgtttacggcattggtgctatcaaaggg
gtgggtgaaggcccaatcgatgccattctcgaagcgcgcaacaaagacggccactttaaa
gacctattcgatttctgtgctcgcatcgacctgaagaaggtcaataaacgagtcattgag
aaactcatctacgcaggcgctttggatcgccttggaccgcatcgcgctgcaatgatggct
tcactgaacgatgctgttaaagcggcgagccaacatcaccaagcagaagcttttggtcaa
agtgatttgtttggcgtgttgaccgaagcacctgaagaagttgagcacaaatacaccaaa
gctgaaccttggccggaaaaagtgtggctcgaaggtgaacgagatactttgggcctttat
ttgaccgggcacccaataaatgcctacataaaggaacttggtaagtacaccagttgtcga
ctaaaagacgcaacaccaaccaggcgggatcaaagtgttactgtcgcaggtctggtaatt
gcggctcgtgtgatgaccactaagcgtggaacgcgcattggtattatgacactggatgat
cgaagcgggcgtatggaggtgatgttattctccgatgcgttagatcgatatgcagaattg
ttagaaaaagataaaattttggttgtttctggacaggtcagctttgatgatttcaatggt
ggtcttaaaatgtccgcgcgcgaggttatggatctcgggactgctcgtgaaaaatatgca
cggggattatcagtttccatcgatcaatctcaaatcaatgaccgattttttgagcgtttt
agtcaaatactagagcctcatcgggcggggagcgttcctgtccatgtatactaccaacgc
tctgatgcacgagcgcgtttgacgttgggtacagaatggcgagtaacgccaagtgacgca
ttattagatgatttaaaacaactacttgggaaaggccaggtagaactcgaatttaactaa
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