Vibrio europaeus: IXK98_23505
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Entry
IXK98_23505 CDS
T07114
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
veu
Vibrio europaeus
Pathway
veu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
veu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IXK98_23505 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
veu03019
]
IXK98_23505 (rhlB)
Enzymes [BR:
veu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
IXK98_23505 (rhlB)
Messenger RNA biogenesis [BR:
veu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IXK98_23505 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
ERCC3_RAD25_C
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
QPG36339
LinkDB
All DBs
Position
1:3205023..3206324
Genome browser
AA seq
433 aa
AA seq
DB search
MKKTHITEQKFADLGLHPQITEGLEKKGFEFCTPIQALALPVLLTGQDIAGQAQTGTGKT
LAFLTATFNHLLTTSEHEGRKPNQPRAIIMAPTRELAIQIYNDAEPLIASTGIKAALAYG
GESYDKQVSKLEDGVDILIGTTGRIIDFYKQKVFNLNHIQAVVLDEADRMFDLGFIKDIR
FLFRRMPEPKERLNMLFSATLSYRVQELAFEHMHNPEHVVVEPEVKTGHRIQEELFYPSN
EHKMALLQTLIEEEWPERAIIFANTKHKCESVWGHLAADGHRVGLLTGDVPQKKRERILE
QFTKGEVDLLVATDVAARGLHIPQVTHVFNFDLPDDCEDYVHRIGRTGRAGASGHSISFA
CEDYAINLPPIEEYIEHAIPVSDYDPSALIEDLPAPLRMRSNRPQQRRTNTGGSRSGNRR
NNNRSRQRQQKDS
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagacgcatatcacagagcaaaagttcgccgatttaggtttacaccctcaaatt
actgaaggtttggagaagaaagggtttgaattttgtacccctatccaagctttggcgttg
ccggtactgctcaccggccaagacatcgcaggtcaagcccaaacgggtacaggtaagaca
ctcgctttcctgactgctacttttaaccacctactgacgacttcagaacatgaaggtcgt
aagccaaatcagccgcgtgccatcatcatggcaccaacacgcgagttggcaattcagata
tacaacgatgccgagccgctaattgcgagcactggcatcaaagctgcgcttgcctacggt
ggcgagagctacgacaagcaggtgtccaagcttgaagatggtgtggacattctgatcggt
acgactggtcgtattatcgacttctacaagcagaaggtatttaaccttaaccatattcaa
gcggttgttcttgatgaagcagaccgcatgttcgatcttggctttattaaagacattcgt
ttcttgttccgtcgtatgcctgaaccaaaagagcgtttgaacatgttgttctcagcaacg
ctttcttaccgcgttcaagagttggcattcgagcacatgcataatccagagcatgttgtg
gttgagccagaagttaaaacgggtcatcgcatccaagaagagctgttctacccttctaat
gaacataagatggctttgctacaaaccttaattgaagaagagtggcctgagcgtgcgatc
atctttgctaacactaaacataagtgtgagtcggtttggggccacttggctgctgacggc
catcgtgttggtttgttaactggcgatgtcccgcagaagaaacgcgagcgtatcttagag
cagtttactaaaggtgaagtcgatctattagtggcaacagacgttgcagcgcgcggccta
catattcctcaagtaacgcacgtgtttaactttgacctaccagatgactgcgaagattac
gtacaccgcattggtcgtacaggtcgtgctggcgcgagcggtcattctattagctttgct
tgtgaagactacgcgattaaccttcctccgattgaagagtacatcgagcacgcgattccc
gtgtcagactacgacccaagtgcattgattgaagatctacctgcaccgctacgtatgcgt
tcaaaccgtccgcagcaacgtcgcaccaatacaggtggttctcgttcaggcaaccgtcgt
aacaacaatcgctctcgtcaacgtcaacaaaaggattcttaa
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