Vibrio antiquarius: VEA_001506
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Entry
VEA_001506 CDS
T01107
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
vex
Vibrio antiquarius
Pathway
vex03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vex00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VEA_001506
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vex03019
]
VEA_001506
Enzymes [BR:
vex01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VEA_001506
Messenger RNA biogenesis [BR:
vex03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VEA_001506
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_19
P-loop_SecA
CMS1
AAA_22
Flavi_DEAD
Terminase_6N
Hydrolase
MerR-DNA-bind
Motif
Other DBs
NCBI-ProteinID:
ACY54189
LinkDB
All DBs
Position
2:1698509..1699801
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AA seq
430 aa
AA seq
DB search
MSFSSQGFAPEVVKALAECGYEKLTPIQQKAIPMARKGHDIFATAQTGTGKTAAFSLPMI
QQLLDSNRSASRKTARALILAPTRELAEQIADNIKAYTKYTNLSVAAIFGGRKMSSQVAA
LENGVDILVATPGRLEEHIEQGNVSVAHLEFLVFDEADRILDMGFIHAVRKIMLDVDTDP
QIMMFSATTSSQLNLLAKDILRKPKRIEVERANTTAQTVAHVLYPVDQERKTELLSELIG
RKNWKQVLVFVNYKETANEVVKELKLDGIKAVVCHGDRAQSARRRALEEFKSGKARVMVA
TDVAARGLDIEDLPHVVNYDMPFLAEDYVHRIGRTGRAGKQGHAVSFVNRDEELTVVQVE
NLIQQRIRRIELAGYEPKQRESYIEKLHSKPAFKNRQGRRNNPNQSATDQGSAERRLAMV
KRLKARRGAK
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgtcattttcatctcaaggttttgcgccagaagtggttaaagcactggcagaatgcggt
tatgaaaagttaacgccaattcaacagaaggcgattccaatggctcgcaaaggccatgat
attttcgctacagcacaaacaggtactggtaaaacggctgcgttttctctgcctatgatt
cagcagttgttagacagtaaccgtagcgcttctcgtaagactgctcgtgcacttatcttg
gctccaactcgcgagcttgctgaacaaattgctgacaacatcaaagcttacacgaagtac
accaatctgtcggtggcggcgattttcggtggtcgtaaaatgtcttctcaggttgcggca
ctggaaaatggtgttgatatccttgtggctacacctggtcgattggaagaacacatcgaa
caaggtaatgtctcggtggcacacttagagtttttggtgtttgatgaagcagaccgtatc
ttggatatgggctttattcatgcagttcgtaagatcatgctggatgtggatacagatccg
caaatcatgatgttttcggcaacgacttcaagccagctaaatctgttagcgaaagacatt
ctgcgtaaaccaaaacgtatcgaagtagagcgtgcaaatactacggcacaaacagttgct
cacgtgctatatccagttgatcaagagcgaaaaacggaactgctttcagagctaattggt
cgcaaaaactggaaacaagtgttggtatttgtgaactacaaagagaccgcaaacgaagtg
gtaaaagagctgaaacttgatggtatcaaagcggtggtttgtcatggtgaccgtgctcaa
agtgctcgtcgtcgtgcgctagaagagtttaagtccggtaaagcacgtgtcatggtggct
accgatgtcgctgctcgaggtctagatattgaagacttacctcacgttgtgaactatgac
atgcctttcctagcggaagattacgttcaccgaattggtcgtacgggccgtgcaggtaaa
caaggtcatgctgtttcatttgtaaaccgagatgaagagctcacggtggttcaggttgaa
aatctaatccagcaacgcattcgccgtattgagcttgcaggctatgaaccaaaacagcgt
gaatcttacattgaaaagctgcactcaaaaccagcattcaagaatcgtcaaggtcgtcgt
aataatccgaaccagtcagcaacagaccaagggtcggcagagcgtcgtcttgctatggtg
aagcgcctgaaagcgcgtcgtggcgcaaagtaa
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