Vibrio antiquarius: VEA_001525
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Entry
VEA_001525 CDS
T01107
Name
(GenBank) cold-shock DEAD-box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
vex
Vibrio antiquarius
Pathway
vex03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vex00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VEA_001525
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vex03019
]
VEA_001525
03009 Ribosome biogenesis [BR:
vex03009
]
VEA_001525
Enzymes [BR:
vex01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VEA_001525
Messenger RNA biogenesis [BR:
vex03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VEA_001525
Ribosome biogenesis [BR:
vex03009
]
Prokaryotic type
rRNA helicases
VEA_001525
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Flavi_DEAD
WSD
Motif
Other DBs
NCBI-ProteinID:
ACY54208
LinkDB
All DBs
Position
2:1722489..1724423
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AA seq
644 aa
AA seq
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MQDSVIQFSDLSLNDSILSALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAF
SLPLLNKIDLNQRKPQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASIVDQMR
ALKSGAQVIVGTPGRVQDLINRERLHLDEVNTFVLDEADEMLNMGFVDDVTAIMEHAPES
AQRVLFSATMPPMLKKIVERFLREPVMVDVAGKNHTVDKVQQQFWVVKGVEKDEAMSRLL
ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILV
ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI
ERVTKSSMEEIQLPLRDQVAEARLAKLGAELEAEKEHKALDKFAELVEKLQTSLDIDPAT
LAAMLLKRQQGKRPLFYIGEDPMVEAIERDKQRRKERREGGRDGGRNFNNQDWDTYQLQV
GREQGVQVKDIVGALANELGLGKGSIGAIKLAQGHTFVQLPKAMTSEAAGKLSKLRIRQQ
DVGAVVCDFDDFRESRGGRRDGGRRDGGRRDGGGYRGNREGGNRGGDRREGGRREGGFRG
NRDGNRDGNREGGERRFDRNRGGDHRGNHRGERGHGRGRRTQEA
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgcaagattctgttattcaattcagcgatttatctctgaatgattctatcctttctgct
ctagacggaatgggtttcgtgtcaccaactccaattcaggctgcggcaatcccacacctg
ttggaaggtgctgacgcgctgggtaaagctcaaacaggtacaggtaaaacggcagcgttc
tctctgcctcttctaaataagatcgatctcaaccaacgtaaaccacaagctatcgttctt
gcgccaacgcgtgagttagcgattcaggttgcggctgaaatgaaaaaccttggtaagaac
atcaagggtcttaaagttttagagatttacggtggtgcttctatcgtagatcagatgcgt
gctcttaagagcggtgcacaagttattgttggtactccaggtcgtgtacaagaccttatc
aaccgtgaacgtctacacctagatgaagtaaacacgtttgtactagacgaagctgacgaa
atgctaaacatgggtttcgttgatgacgttactgcgatcatggaacatgcaccagagtct
gctcaacgcgttctattctctgcaacaatgcctccgatgcttaagaaaatcgttgagcgg
ttcctacgtgagcctgtaatggttgacgttgctggtaagaaccacactgtagacaaagtt
caacagcagttctgggtagtgaagggtgtagagaaagatgaagcgatgtctcgtcttctt
gaaacggaagaaactgatgcatcaatcgtcttcgtacgtactcgtcaagacactgagcgt
ctagctgattggctatctgcacgtggctttaaagcggctgctctgcacggtgacattcct
cagtctctacgtgagcgtactgttgatcacatcaaacaaggtgttatcgacatcctagtt
gcaactgacgttgtggcacgtggtcttgatgttccacgtattacgcacgtattcaactac
gacatcccattcgatgttgagtcttacatccaccgtatcggtcgtactggccgtgctgga
cgtaagggtaaagctatccttctagttcgcactaaccaaattcgtatgcttcgcactatc
gagcgtgtaactaagtcatctatggaagaaattcaacttcctctacgtgaccaagttgct
gaagctcgtctagctaaactaggcgctgagcttgaagcagagaaagagcacaaagctcta
gacaaatttgctgagctggtagagaaactacaaacttctctagacatcgacccagcaacg
cttgctgctatgcttcttaagcgccagcaaggtaaacgtcctctgttctacattggcgaa
gatccaatggttgaagcgattgagcgtgataagcaacgccgcaaagagcgccgtgaaggt
ggtcgtgacggcggtcgtaacttcaacaaccaagattgggatacttaccagcttcaagtt
ggtcgcgagcaaggtgttcaagttaaagacatcgttggtgctctagcgaacgaactaggt
ctaggtaaaggctctatcggtgcgatcaaactagcacaaggccacacattcgttcagtta
ccaaaagcaatgacttctgaagctgcgggcaagctaagcaaactacgcatccgtcaacaa
gatgttggtgctgtagtatgtgacttcgatgacttccgagagtctcgtggtggtcgccgt
gacggtggtcgtcgcgatggcggtcgtcgtgatggcggcggttaccgtggcaaccgcgaa
ggcggcaaccgtggtggtgatcgtcgtgaaggcggtcgtcgcgaaggtggcttccgtggt
aaccgtgacggcaaccgcgatggtaaccgtgaaggtggcgaacgtcgcttcgatcgtaac
cgtggtggtgatcaccgtggtaaccaccgtggtgagcgtggtcacggccgtggtcgtcgc
actcaagaagcataa
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