Vibrio antiquarius: VEA_001817
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Entry
VEA_001817 CDS
T01107
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
vex
Vibrio antiquarius
Pathway
vex03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
vex00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
VEA_001817
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vex03400
]
VEA_001817
Enzymes [BR:
vex01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
VEA_001817
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
VEA_001817
DNA repair and recombination proteins [BR:
vex03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
VEA_001817
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Zn_ribbon_IS1595
Zn_ribbon_6
Motif
Other DBs
NCBI-ProteinID:
ACY49980
LinkDB
All DBs
Position
1:complement(207108..207917)
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AA seq
269 aa
AA seq
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MPELPEVEVSRMGISPHMVGQTIQSFTFRTPKLRWDIPIELKKLEGQVIRAISRRAKYLL
IETNTGTAIVHLGMSGSLRVLDADFPPAKHDHVDLKLSSGKILRYNDPRRFGAWLWCAPG
ESHAVLANMGPEPLTEEFNAEYVAEKAKNKRVAVKQFIMDNKVVVGVGNIYANESLFKSR
IHPSRPAGKLTSQEWGGLVENIKMTLEIAITQGGTTLKDFAQADGKPGYFAQELLVYGKA
GEPCPECGERLQELKIGQRNTFFCSECQK
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atgcctgagttgccagaagttgaagtcagtcgtatggggattagcccccacatggttgga
caaacgatccagtcgtttacttttcgaacgcctaaattgcgctgggatattcctatagag
cttaaaaaattggaagggcaggtgatccgtgcgattagccgtcgcgcaaaatacttactg
atcgagacaaacacaggtacagccattgttcacttgggcatgtcggggtctttacgtgtc
ctagatgccgactttccgccagcaaagcacgatcatgtggatctcaaactaagcagtgga
aaaatactgcgttataacgatccgcgtcgttttggggcatggctgtggtgtgctcctggc
gagtcacatgctgtactagcaaacatggggcctgagcctttaactgaagagttcaatgcg
gaatatgtagcggagaaagctaaaaataagcgtgtcgccgtcaagcagttcatcatggac
aacaaagtcgtggttggtgtcgggaacatctacgcgaatgagtcgttgtttaaatctcga
attcacccttcaaggcctgcaggtaagctgacttctcaagagtgggggggacttgttgaa
aatatcaaaatgacacttgagattgccattacgcaaggtgggactacgctgaaagatttt
gcgcaagccgatggaaagccgggttactttgcacaagagttactagtttacggaaaagcc
ggagagccatgcccagagtgcggcgaacgacttcaagagctaaaaatagggcagcgtaat
accttcttttgtagtgagtgtcagaaataa
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