Vibrio antiquarius: VEA_002174
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Entry
VEA_002174 CDS
T01107
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
vex
Vibrio antiquarius
Pathway
vex03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vex00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
VEA_002174
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vex03021
]
VEA_002174
03400 DNA repair and recombination proteins [BR:
vex03400
]
VEA_002174
Enzymes [BR:
vex01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
VEA_002174
Transcription machinery [BR:
vex03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
VEA_002174
DNA repair and recombination proteins [BR:
vex03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
VEA_002174
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Peptidase_M23
Tipalpha
Motif
Other DBs
NCBI-ProteinID:
ACY50337
LinkDB
All DBs
Position
1:598457..602659
Genome browser
AA seq
1400 aa
AA seq
DB search
MKDLLNFLKAQHKTEEFDAIKIGLSSPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLKSL
PSRIGLLMDIPLRDIERVLYFEMYVVTEPGMTDLEKGQMLTEEEYLDRLEEWGDEFTAKM
GAEAIKDLLGSMDMHAEAEQMREELETTNSETKRKKVTKRLKLVEAFIASGNNPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYSKLETRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTREKINVKGEGMYLSGPEEAEKAYRTK
QAELHARVKVRITETVVDEDGNSTTETKMVDTTVGRAMLWQIVPAGLPYSIVNQKLGKKQ
ISNLLNEAYRKLGLKDTVIFADQIMYTGFAYAALSGVSVGIDDMVVPAAKYTEIAEAEEE
VREIQEQYQSGLVTAGERYNKVIDIWASTNDRVAKAMMENLSSETVVNRDGEEEQQESFN
SIYMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFKEGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVVTEHDCGTHEGVDMMPHIEGGDVKVALSELAL
GRVVAEDVLKPGTEDVLIPRNTLIDEKWCQIMEENSVDSMKVRSVVTCDSDFGCCAQCYG
RDLARGHLVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASTAAAENSVQVKNNGSIKL
HNAKSVLADDGKIVITSRATELTIIDEFGRTKEKHKLPYGTLLSKGDGDTVQAGETVANW
EAHTLPIITEVAGRIQFVDMIDGVTVSRQTDDLTGLSSSEVTDPAARPSAGKDMRPAIKL
VDEQGNDVMIPGTDMPAHYFLPGKAIVNIEDGAAVGVGATLARIPQKSGGNKDITGGLPR
VADLFEARKPKEPAILAEHTGTVSFGKETKGKRRLVITRESGEAYEEMIPKHRQLNVFEG
EKVERGDVIADGPESPHDILRLRGVHAVTQYIANEVQEVYRLQGVKINDKHIETIVRQML
RKCTITHSGDSEFLPGEQIEYSQVKIANRNLEAEGKEPARFERELLGITKASLATESFIS
AASFQETTRVLTEAAVSGKRDDLRGLKENVIVGRLIPAGTGFAYHQERQAKRSEAQDGPS
AEQATDNLAALLNAGFSSEE
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaactttctaaaagcacagcataagaccgaagaatttgatgcaatc
aaaatcggtctatcttcaccagacatgatccgttcatggtcttttggtgaagttaaaaaa
cctgaaacgatcaactatcgtacgttcaaacctgaacgcgatggtctgttctgtgcgcgt
atctttggtccagttaaagactacgaatgtctttgtggtaagtacaagcgcctgaagcac
cgtggtgttatctgtgagaagtgtggtgtagaagttacacaaactaaagttcgtcgtgac
cgtatgggccacattgaactggcttcaccagtagctcacatctggttcctaaaatcgcta
ccgtctcgtatcggtctactgatggatatccctctacgtgatatcgaacgtgttctttac
ttcgaaatgtacgtagtaacagaaccaggtatgactgatctagaaaaaggtcagatgctt
acggaagaagagtatctagatcgtctagaagagtggggcgacgagttcactgctaagatg
ggtgcggaagctatcaaggacctactaggttctatggatatgcacgctgaagcagaacaa
atgcgtgaagagttagagacaacaaactctgaaactaagcgtaagaaagtaactaagcgt
cttaagctggtagaagcgttcatcgcatcgggtaacaacccagagtggatgatcctaaca
gtacttccagtacttccgccagatctacgtcctctagtacctctagatggcggtcgcttt
gcgacttctgatcttaacgatctataccgtcgtgtgatcaaccgtaacaaccgtttgaag
cgtcttctagagctagctgctccggatatcatcgtacgtaacgaaaaacgtatgctgcaa
gagtctgttgatgcgctactagataacggtcgtcgtggtcgtgcgatcacaggttctaac
aagcgtcctctgaaatctcttgctgatatgatcaagggtaaacaaggtcgtttccgtcag
aaccttctaggtaaacgtgtagactactctggccgttctgtaatcacagtaggtccatac
cttcgtctacaccagtgtggtcttcctaagaagatggcacttgagctattcaaaccattc
atctacagcaagctagagactcgtggtcttgcgactacaatcaaagctgctaagaaaatg
gtagagcgtgaagaagcggtcgtttgggatatcctagacgaagtaatccgtgaacaccca
gtactattgaaccgtgcaccgacacttcaccgtctcggtatccaggcgttcgaaccagta
ctaatcgaaggtaaagcgattcagctacacccacttgtatgtgcggcgtacaacgcggac
ttcgatggtgaccaaatggcggttcacgtacctctaactctagaggcacagcttgaagct
cgtactctgatgatgtcgacaaacaacattctgtcgccagcgtcaggtgatccgatcatc
gtaccttctcaggacgttgtattgggtctgtactacatgactcgtgaaaagatcaacgtg
aaaggtgaaggcatgtacctttcgggcccagaagaggctgagaaagcataccgcactaaa
caagctgagcttcacgcacgcgttaaagtacgtattacagaaaccgttgtagacgaagac
ggcaacagcactacagaaaccaagatggtagacaccactgttggtcgtgcaatgctatgg
caaatcgtgccagctggtctaccgtacagcatcgttaaccaaaagctaggtaagaagcaa
atctctaacctacttaacgaggcgtaccgtaaactaggtctgaaagacactgtaatcttc
gctgaccaaatcatgtacaccggtttcgcatacgcggcactttctggtgtatctgttggt
atcgacgatatggttgtaccagcagctaagtacactgaaatcgcagaagcggaagaagaa
gtacgtgaaatccaggaacagtaccaatcaggtcttgttactgcgggcgaacgctacaac
aaagttatcgatatctgggcatcgaccaacgaccgtgttgcgaaagcaatgatggaaaac
ctttcatctgaaacggtagttaaccgtgacggtgaagaggaacagcaagagtcattcaac
agcatctacatgatggcggactcgggcgctcgtggttctgcagcacagattcgtcagctt
gcgggtatgcgtggtctgatggcgcgtccagatggttcaatcatcgaaacgccgatcacg
gcgaactttaaagaaggtctaaacgtacttcagtactttatctcaacgcacggtgctcgt
aagggtcttgcggatacggcactgaaaacagcgaactcgggttacctaactcgtcgtcta
gtagacgttgctcaagacgttgttgtaactgaacatgactgtggcactcacgagggtgtt
gacatgatgcctcacatcgagggtggtgatgttaaagttgcactttctgagcttgctctt
ggtcgtgttgttgctgaagacgtactaaaacctggcactgaagacgttcttattccacgt
aacaccctgatcgatgagaagtggtgtcaaatcatggaagagaactcagtagacagcatg
aaagtgcgctctgtagtaacgtgtgattctgacttcggttgttgtgcacagtgttacggt
cgtgacctagcacgtggtcacctagtgaaccaaggtgaagcagtaggtgttatcgctgct
cagtctatcggtgaaccaggtacacagcttaccatgcgtacgttccacatcggtggtgca
gcatcgacagcagcggcagagaacagtgttcaagttaagaacaacggttctatcaagcta
cacaacgctaaatctgtattggctgatgacggtaagatcgttatcacttctcgtgcgaca
gaattaactatcattgatgagtttggtcgtacgaaagagaaacacaaactgccttacggt
acgctactaagcaaaggagatggcgatacagttcaagctggcgaaacagttgcaaactgg
gaagcacacacactacctatcattactgaggtagcaggtcgcatccagttcgtagacatg
atcgacggcgtaacagtatctcgtcaaaccgatgacctaacaggtctatcttcaagcgaa
gtaactgacccagcagctcgtccttcagcaggtaaagatatgcgtccagctatcaaactt
gttgatgagcaaggtaacgatgtaatgatccctggtactgatatgccagctcactacttc
ctacctggtaaagcgattgtgaacatcgaagatggcgcagcagtaggtgttggtgcgaca
ctagcacgtattcctcagaagtctggcggtaacaaagatatcaccggtggtcttccacga
gttgctgacctatttgaagcacgtaagccgaaagagcctgcaatccttgctgagcacaca
ggtactgtgagcttcggtaaagagaccaaaggtaaacgtcgcttagtgatcacacgtgaa
agcggtgaagcttacgaagagatgattcctaagcatcgtcagttgaacgtattcgaaggt
gaaaaagttgaacgtggtgacgtgatcgcagatggtccagagtctccacacgacatccta
cgtctacgtggcgtacacgcggtaacgcagtacattgctaacgaagtacaggaagtttac
cgtctacaaggcgttaagattaacgataagcacattgaaactatcgttcgtcagatgcta
cgtaagtgtactattactcactctggtgactctgagttcctacctggtgagcagattgag
tactcacaagttaagattgctaaccgtaacctagaagctgaaggcaaagagcctgcacgt
ttcgaacgtgaactactaggtatcactaaagcatctctagcgactgagtcgttcatctct
gcggcatcgttccaggagacaactcgcgtactaacagaagcagcggtttctggtaagcgt
gatgacctacgtggtctgaaagagaacgtaattgttggtcgtctgatcccagctggtact
ggtttcgcataccaccaagagcgtcaagctaaacgttctgaagcgcaagatggtccttct
gctgagcaagcaacggataacctagcggcacttctaaacgctggtttctcttctgaagag
taa
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integrated database retrieval system
