Vibrio antiquarius: VEA_002717
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Entry
VEA_002717 CDS
T01107
Name
(GenBank) aTP-dependent DNA helicase RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
vex
Vibrio antiquarius
Pathway
vex03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vex00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VEA_002717
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vex03019
]
VEA_002717
03400 DNA repair and recombination proteins [BR:
vex03400
]
VEA_002717
Enzymes [BR:
vex01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VEA_002717
Messenger RNA biogenesis [BR:
vex03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VEA_002717
DNA repair and recombination proteins [BR:
vex03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
VEA_002717
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
DDE_3
Enoyl_reductase
Motif
Other DBs
NCBI-ProteinID:
ACY50879
LinkDB
All DBs
Position
1:complement(1244161..1246086)
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AA seq
641 aa
AA seq
DB search
MQSDSLHQTLQSVFGFDSLRQGQQPVIEAVMNGYSAAAIFPTGSGKSLCYQLPATVLPNL
TLVISPLLALMKDQLNFLQSKGIPAASIDSSQSREESQRVMAGVKNGQIKILMISVERLK
NERFREFIRQVPISLMVVDEAHCISEWGHNFRPDYLKLPQYQRELNIPQSLLLTATATPA
VIEDMKQKFDIASEHITVTGFYRPNLDISVIPCEEATKQEVLSELIASSPKLPTIVYVTQ
QQTAEQVAKSLIHIGINAHAYHAGMKSDIREQIQQQFMDSQIDCIVATIAFGMGVDKSDI
RRVIHFDLPKSIENYAQEIGRAGRDGQRSECILLGNTSGLTVLENFVYGDTPELTSINYV
VEQAKEHAPQWEVVPLRLSRESNIRQLPLKTLLVYLELHKLIEAKYSYFAEYRFKFLHDQ
QFIVNQFQGERRQFVEAIFSCSQKAKVWCQVDLEALWMNYQSERSRVVAALDYFHQNGWI
ELESKQLTDVYSVLPTTQSSDVLIQQLYELFQSKESKDIERIHTMLRLFQSEHCLSSQLA
NYFADHNAPEQCGHCSVCRGQVASFPTPQGEDIEPPQVAMWVQEFIQLSPSAISNDAVAR
FLCGISTPLISQLKASKLAGYGAMANTSFEQVLAQVEAVRA
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atgcaaagtgactcgctgcatcaaacacttcaatccgtatttggttttgactcattacgc
caaggtcaacaacccgttattgaagcggttatgaatggttactctgctgcggccatcttt
cctacaggttcgggtaagtctctctgttaccaattgccagcaaccgtattgcccaatctt
acgttggtgatctcgccgttgttggcgctaatgaaagatcagctgaactttttgcaaagt
aaagggatcccggccgcttctatcgatagcagtcaaagcagagaagagtcacaacgcgtc
atggcaggggtaaaaaatggacagatcaaaatattgatgatttctgttgagcgcctaaaa
aacgagcgttttcgtgagttcattcgccaagtaccgatctctttgatggtggttgatgaa
gcgcactgtatttccgaatggggacataacttccgccctgattatctcaagctaccgcaa
tatcaacgtgaactgaacattccacaatctttgcttctcactgcaacagcaacgcccgca
gttattgaagacatgaaacaaaagttcgatattgccagtgaacatattaccgttacaggc
ttctaccgccccaatctggatatctcggtgatcccatgcgaggaagcaacgaaacaagaa
gtgctaagtgagctcatcgcctcttctcctaagcttccgactatcgtatacgtgacacaa
cagcagacagcagagcaagtagcaaaatcactaatccatattggcattaatgctcacgcg
taccatgcaggtatgaaaagcgacatccgtgaacaaatccaacagcagtttatggatagc
caaattgactgtattgttgccacgattgcatttggtatgggggtcgataaatctgatatc
cgccgcgtcattcacttcgacttacccaaatcgatcgagaactacgcacaagagattgga
cgtgcaggcagggacgggcaacgttctgagtgcattctgctgggcaatacgtccggctta
acggtgttggaaaactttgtctatggtgacacacctgaactaacctcgattaactatgta
gtcgagcaagcgaaagaacatgctccacaatgggaggtagtgccactgcgtttatcgcgt
gaaagtaatatccgccaattgccactcaaaaccttgttggtttatttggagctacataaa
ctcattgaagcaaaatacagttactttgcggaatatcgctttaagtttttgcacgatcag
caatttattgtgaatcaatttcaaggcgagcgacgtcaattcgtggaggctattttctcc
tgctcgcaaaaagccaaagtgtggtgccaagttgacctagaagcgttatggatgaactat
caatcggaacgcagccgagttgtcgcagccctcgactattttcaccagaatggttggata
gagctagagagcaaacaactgaccgacgtatactctgttttgccaaccacacagagttct
gatgttttaatccaacaactgtatgaactgttccaatccaaagaaagcaaagatatcgaa
agaattcacactatgctgcgcttgttccagtcagagcactgtttgagctcacaattggcg
aactactttgcggatcacaatgcaccagagcaatgtggtcactgctccgtgtgtcgtggt
caagtcgcttcgttcccaacaccacaaggtgaggatattgagccacctcaagtagcaatg
tgggtgcaggaatttattcagctctccccttcagctatcagcaatgatgctgtcgcccgc
ttcttgtgcggaattagtacccctttaattagccagctaaaagcttcaaaactggcgggt
tatggtgcgatggccaacacaagctttgaacaagtattagctcaggtagaagcagtaaga
gcctag
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