Vibrio antiquarius: VEA_002988
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Entry
VEA_002988 CDS
T01107
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
vex
Vibrio antiquarius
Pathway
vex03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vex00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VEA_002988
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vex03019
]
VEA_002988
03009 Ribosome biogenesis [BR:
vex03009
]
VEA_002988
Enzymes [BR:
vex01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
VEA_002988
Messenger RNA biogenesis [BR:
vex03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
VEA_002988
Ribosome biogenesis [BR:
vex03009
]
Prokaryotic type
rRNA processing factors
VEA_002988
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ACY51150
LinkDB
All DBs
Position
1:complement(1535130..1538204)
Genome browser
AA seq
1024 aa
AA seq
DB search
MLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAE
RHGFLPLKEIAREYFPEGYTYQGRPSIKEVLTEGQEVIVQVEKEERGSKGAALTTFISLA
GSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLELPQGMGLIVRTAGVGKSAEELEWD
LNVLLNHWGAIKGAADSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNTIYERAKEH
IQLVRPDFLNRVKKYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDI
NSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLR
EAVRLDRARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCSGTGVVRDNESLALSVL
RLIEEEALKDNTAQVLAVVPVPIASYLLNEKRRSVNHIERIQEVKITVVPNSDMETPHFE
VIRVREGEEFDLISYLLPKKLEAMKEAEGKEPAEVDVKPKRIEEPVLKGFAAPSQTAPAP
AAKPAPEAKKKEQKVEQEEKPGLFSRLFKALGSFLFGGSEEVKEEPKPQEEKKPNRDNRR
NKRDRNDRRRNNNQRDNRENRDNRDNRDNRRRRKPRDEQANEQNEAQQQTNKQQNRNQKR
KPKAQQADKAQEQKANAKVAEKGLQLAAEARTETKPEESKPKQQNAKAEKVKERRQRRKL
NKSVRVKDQEAVEKKTEETAVKTQEMVETKVEKPTEAAVETQQDNKQAESKQRRNRRSPR
HLRASGQRRRRGRDRRPNPFRLRKGGVASPEMAMGKVMPRYIPKPAPKKEEQVKEEAVAA
VPTMQGGFACPEMAMGKVIIRREQPVVTEAPVVESKVQETVEAKVESPAVEAPVVEAVIA
EKTESAVVETASVEPIVETPATEHAEPVDAIVETAPAEEPVVEAAKEIAAEAPVAKPEPK
VEAIKVAAKLNASAPMTKAPGPQELREITVAAAPFKTERYQAKGAGSQVAKNRASAEMTK
PNFN
NT seq
3075 nt
NT seq
+upstream
nt +downstream
nt
atgttaattaacgcaactcaaaaagaagagttgcgtgtcgctctggttgatggccagcga
cttttcgatcttgatatcgagagtccaggtcatgaatctaaaaaagcgaatatctacaaa
ggacgtatcacacgtatcgaaccaagcttagaagccgcatttgttgattacggcgccgag
cgtcacggtttcctccctctcaaagaaattgcccgcgaatatttccctgaaggttacacc
taccaaggtcgtccaagcatcaaagaagtgctaacggaaggccaagaagttatcgttcaa
gtggaaaaagaagaacgtggaagcaagggcgcagctcttactactttcatttctcttgct
ggtagttaccttgttcttatgcctaacaaccctcgtgctggcggtatttctcgccgaatc
gaaggtgacgagcgtactcaactaaaagccgcattaagtactttggaactgcctcagggc
atgggcctaatcgtacgtactgctggcgttggcaagagtgccgaagaacttgagtgggat
ttgaatgtactacttaaccactggggtgcaatcaaaggtgcagcggactctaaccctgct
ccattcttaatccaccaagaaagtaacgttatcgttcgtgcaatccgtgactatttacgt
cgtgatattggcgaaatcttaattgacagcaacaccatctacgaacgtgcaaaagagcac
attcaattggtgcgccctgatttccttaaccgcgttaagaaatatgaaggcgaagttcca
ctattcagccactaccaaatcgaaagccaaattgaatcagctttccaacgtgaagtgcgt
ctgccatctggtggttctattgttattgacccaaccgaagcactaacgtctatcgatatc
aactctgctcgtgcaaccaagggcggcgatattgaagaaacagctctaaacacgaaccta
gaagcagccgacgaaattgctcgccagttacgtctacgtgacttgggtggcttagtggtt
atcgactttatcgatatgacacctgttcgccaccaacgagaagtagaaaaccgtctacgt
gaagccgttcgtcttgatcgcgctcgtgtacaaatcggtcgtatttctcgctttggtttg
ttggagatgtcacgtcaacgtttaagcccttctctagcagaagcaagccaccacatctgt
cctcgctgtagcggtactggagtcgttcgcgacaacgaatctctagcactttctgtgctt
cgtttaatcgaagaggaagcactgaaagacaatacagcgcaagttctcgcagttgtacct
gtgccaatcgcttcttacttgttgaacgaaaaacgtcgttcagttaaccatatcgaacgc
attcaagaagtgaagattacggttgttccaaactctgacatggaaacgccgcacttcgaa
gttatccgtgttcgtgaaggtgaagagttcgatctgatttcttacctacttcctaaaaaa
ctggaagcaatgaaagaagcggaaggtaaagagccagcggaagttgacgtaaaacctaaa
cgaatcgaagaacctgttcttaaaggctttgcggctccttctcaaacggcacctgcacca
gcagctaaacctgcccctgaggcgaagaagaaagaacagaaagttgaacaagaagaaaaa
cctggactgttcagccgtttgtttaaagcacttggtagtttcctattcggcggttctgaa
gaggtaaaagaagaaccgaaacctcaggaagagaaaaagccaaatcgcgataatcgacgc
aacaaacgtgatcgcaatgatcgtcgtcgcaataacaaccaacgcgataatcgtgagaac
cgcgacaatcgtgataaccgtgataaccgacgtcgtcgtaagcctcgtgatgagcaagcg
aatgagcaaaacgaagcgcaacaacaaaccaataaacagcaaaaccgcaaccaaaagcgt
aagcctaaagctcaacaagcagacaaagcccaagagcaaaaagcaaatgcaaaagtagcg
gaaaaaggcctgcagctagcggcagaagctcgaactgaaacaaaaccagaagagagcaaa
ccaaagcaacaaaacgcgaaagcagaaaaagtgaaggagcgtcgccaacgtcgcaaactg
aacaagtctgtacgcgttaaagaccaagaagcggttgagaagaaaacagaagaaacggcg
gttaagactcaagaaatggttgaaaccaaagttgagaagccaacagaagcagcggtagaa
acacagcaagacaacaagcaagcagagtctaagcaacgtcgtaaccgtcgttcgccacgt
cacctgcgtgcaagcggtcagcgccgtcgccgtggtcgcgatcgccgtcctaacccgttc
cgcctgcgtaaaggtggtgtagcttctcctgagatggctatgggtaaagtaatgccacgc
tacattccgaaaccagcacctaagaaagaagagcaagttaaggaagaagcagtagcagca
gtacctacaatgcaaggtggttttgcttgcccagaaatggctatgggtaaagtgattatt
cgccgcgagcaacctgttgtaacagaagcaccagttgttgaatcaaaggttcaagaaaca
gttgaagcgaaagttgaatctccagcagtagaagcacctgttgtggaagcagtaatcgca
gaaaaaactgaatcggcagtagtagaaacagcctctgtagagcctatcgttgaaactcct
gcaactgaacatgctgaaccggttgatgccattgtagaaacggcaccagctgaagagcct
gtggttgaagcagcaaaagagattgcagccgaagcgccagtagctaaaccagagcctaaa
gtcgaagccattaaagttgctgctaagctaaacgctagcgcaccgatgacaaaagcacct
ggccctcaagagctacgcgaaatcactgttgcagcagcgccgttcaaaaccgaacgttac
caagctaaaggtgcgggtagccaagtggctaaaaaccgcgcatcggcagagatgacaaag
cctaactttaactag
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