Vibrio antiquarius: VEA_003948
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Entry
VEA_003948 CDS
T01107
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
vex
Vibrio antiquarius
Brite
KEGG Orthology (KO) [BR:
vex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vex03032
]
VEA_003948
03400 DNA repair and recombination proteins [BR:
vex03400
]
VEA_003948
Enzymes [BR:
vex01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
VEA_003948
DNA replication proteins [BR:
vex03032
]
Prokaryotic type
DNA Topoisomerases
VEA_003948
DNA repair and recombination proteins [BR:
vex03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
VEA_003948
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Topo_Zn_Ribbon
TOP1_ZnF
Toprim
zf-C4_Topoisom
zf-TFIIB
Motif
Other DBs
NCBI-ProteinID:
ACY52108
LinkDB
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Position
1:complement(2586960..2589590)
Genome browser
AA seq
876 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGKDFIVKSSVGHVRDLPTAGQSTGEKKAAAISTKGMSPE
EKARVKKEKDRKALIKKMGINPYHDWEANYQILPGKEKVVNELQKLAKDADCVYLATDLD
REGEAIAWHLREIIGGDEERYKRVVFNEITKNAIQQAFQTPGELNMDGVNAQQARRFMDR
VVGFMVSPLLWKKVARGLSAGRVQSVAVKLLVEREREINAFVPEEFWDIHANTKTKDKAD
FKLLVAQKDGSAFKPVNEAETKAAMSVLENASYEVCKREDRPTKSKPSAPYITSTLQQAA
STRLGYGVKKTMMLAQRLYEAGYITYMRTDSTNLSAEAVDAVRDFIGSEFGDKYLPAKPL
TYGSKEGAQEAHEAIRPSNVGVKAEDLQGVDADAHKLYALIWNQFVACQMTPAEYDSTTI
SVKAAEYTLKAKGRILKFDGWTRVQRPMGKNEDTILPAVQLGDKLSLESLDPKQHFTKPP
ARYTEAALVKELEKRGIGRPSTYASIISTIQDRGYVKVDQRRFYAEKMGEIVTDRLDDSF
NDLMNYDFTARMEQKLDQIAEGEVNWKAVLDNFFADFTGDLEKAELDESEGGMKLNHIVM
TDIECPTCSRPMGIRTASTGVFLGCSGYALPPKERCKTTINLGDEEGIINVLEEDVETAA
LRAKKRCPICETAMDAYLIDDKRKMHVCGNNPNCEGYLVEYGEFKVKGYDGPVVECDKCG
SDMVLKNGRFGKYMDCTSETCKNTRKILKNGEVAPPKEDPVHFPELPCENSDAYFVLRDG
ASGLFMAASNFPKSRETRAPLVAELARFEERLPEKFKYLATAPQEDPDGRPAVVRFSRKT
KENYVRSEENGKPSGWTALFVEGKWEVTDKRKKAKA
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaatcactcgttatagtggagtcaccagccaaggcaaagacgataaataagtac
cttggtaaagactttattgttaagtctagtgttggtcatgtgcgtgatctgcctacggcc
ggtcaaagcactggtgagaaaaaagccgcagccatctcaacaaaagggatgagtccggaa
gagaaagcgcgcgttaaaaaagagaaagaccgcaaagcgttgatcaaaaaaatggggatt
aacccatatcatgactgggaagcgaattaccaaatccttccaggcaaagaaaaagttgtc
aacgaactacaaaaactcgccaaagacgcagattgcgtttatctcgcaaccgacttggac
cgcgaaggggaagcaatcgcatggcaccttcgtgagatcatcggtggcgatgaagagcga
tacaaacgtgtagtttttaacgaaattacgaaaaacgcgatccaacaagctttccaaaca
cctggagagctgaacatggatggtgttaatgcccaacaagcgcgtcgcttcatggaccgt
gtcgttggttttatggtttcacctctactttggaaaaaagtggctcgtggtttatctgct
ggtcgcgtgcagtctgttgcggtgaaactattagttgagcgtgagcgtgagattaacgcg
tttgtaccagaagaattctgggatattcatgcgaatacgaaaacgaaagacaaagcggac
tttaaactacttgttgctcagaaagatggttctgcgtttaagccagttaatgaggcagaa
accaaagcagcgatgtctgtgcttgagaatgcaagttacgaagtatgtaagcgtgaagat
cgcccgacgaagagcaagccttcagcaccttacatcacctctacgcttcaacaggcagcg
agtacacgtcttggctacggcgtgaaaaagaccatgatgctagctcagcgcctctatgag
gccggttatatcacttatatgcgtacggactcgactaacctaagtgccgaggctgtggac
gctgtacgtgattttattggttctgagtttggtgataagtatttaccagcgaaaccgctg
acgtatggcagtaaagaaggggcacaggaagcgcacgaagcgatccgtccttcaaatgtg
ggtgttaaagcggaagacctgcaaggtgtcgatgctgatgcgcacaaactttacgctttg
atttggaatcagtttgtcgcgtgtcaaatgacaccagcagaatacgattcaacaaccatc
agcgtaaaagcagcagaatacacgcttaaagcgaaaggccgtatccttaaatttgacggc
tggactcgtgtacaacgtccaatgggcaaaaacgaggatacaatccttcctgcggtacaa
cttggcgataagctaagcttagagtcacttgaccctaaacagcactttacaaagccacct
gcgcgctacactgaagcagcactggttaaagagctggaaaaacgaggtattggtcgtcct
tcgacttatgcatcgatcatttctacgattcaagatcgtggttacgtaaaagttgatcag
cgtcgtttctacgccgaaaaaatgggcgaaattgttaccgaccgccttgatgacagcttt
aacgatttaatgaactacgacttcaccgcccgcatggaacagaaactggaccaaatcgct
gaaggtgaagtgaactggaaagcagtgctagataacttctttgctgatttcactggcgat
cttgaaaaagcggaattggatgagtcagaaggcggtatgaagctaaaccatatcgtcatg
acggatatcgaatgtccgacgtgtagccgtccaatgggtatccgtactgcttcgacaggt
gtgttcttaggctgttctggttacgcgttaccaccaaaagagcgttgtaagacaaccatc
aacttgggtgacgaagaaggtattattaacgttttagaagaagacgttgaaacggccgcg
cttcgtgctaaaaagcgttgtccgatctgtgaaacggcgatggatgcgtacctgattgat
gacaagcgtaagatgcatgtttgtggtaataacccgaactgtgaaggctaccttgttgaa
tacggtgagttcaaagtcaaaggctatgatggtccagttgttgaatgtgacaaatgtggc
tctgatatggtgcttaagaacggtcgctttggtaaatacatggactgtacgagtgaaacg
tgtaagaacactcgtaagattctgaagaatggcgaagtcgcgccaccgaaagaagatcct
gttcatttccccgagttgccttgtgaaaactcagatgcgtatttcgtacttcgtgatggt
gcttcaggtctatttatggcggcaagcaacttcccgaaatcgcgcgagacacgtgctcct
ttggttgctgaactggcacgttttgaagagcgtttacctgagaagttcaaatacctagcg
accgcaccgcaagaagatcctgatggtcgtcctgcagttgtacgctttagtcgcaaaaca
aaagagaactacgttcgttcggaagagaacggcaaaccatctggttggacagcgctcttt
gttgaaggtaagtgggaagtcacagataagcgtaaaaaagcgaaagcataa
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