Vibrio antiquarius: VEA_004089
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Entry
VEA_004089 CDS
T01107
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
vex
Vibrio antiquarius
Brite
KEGG Orthology (KO) [BR:
vex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vex03016
]
VEA_004089
Enzymes [BR:
vex01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
VEA_004089
Transfer RNA biogenesis [BR:
vex03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
VEA_004089
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
DUF7018
Motif
Other DBs
NCBI-ProteinID:
ACY52249
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All DBs
Position
1:complement(2749942..2751108)
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AA seq
388 aa
AA seq
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MIECQRFAGIFYSEKYVNYQIITKNKDLEEVCIHAREADVVMLDTEFVRIRTFYPQLGLI
QLFDGNRLSLIDPTELTDMTPFVALLKDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQ
LMAAFLGHGLSTGFASLVEEYLGVELDKSESRTDWMARPLTQKQLDYAAADVHYLLPLYE
KLLDKVTQAGWWEAVQQESDLLVSKRIRVTNEENAYLDIKGAWQLKPSELAILKPLAMWR
YREAIKRDLALNFIFKEGDLLTVARLGLTNFKKMEAEDIDIRAINRHGAKIAAIVKQAKQ
TPSEEYPAKIERLMDYPGYKQVFKNMKDIVKSASQKSGLATEFLASKKQINQLISWVWKK
DCDPEVLPDLMQGWRLDLLGDKMNKALK
NT seq
1167 nt
NT seq
+upstream
nt +downstream
nt
atgatagaatgccagcgttttgctggcattttttatagcgagaagtatgtgaattatcaa
attattaccaaaaacaaagatctagaagaagtttgcattcacgcccgagaggcagatgta
gtgatgctggataccgaattcgtccgtattcgcactttctacccgcagttaggtctgatt
cagcttttcgatggtaatcgcctctcgctgattgatccgaccgaattaacggatatgacg
ccgttcgtagcgctattaaaagatacttctgtgctaaaagtgctgcacgcctgcggtgaa
gatttagaagttttccaaaacgcatttggttgtacgccgttccctatggtagatacacag
ttgatggcggcctttcttggccacggtctatcaacaggcttcgcatcgctggtggaagaa
tatttaggcgtagagctcgacaaaagtgaatcacgtactgactggatggctcgaccgttg
acgcaaaagcaattagattatgctgctgcagacgtgcattacttgttaccgttatacgaa
aagctgctcgataaggtgacgcaagcaggttggtgggaagccgtacaacaagaaagtgat
ttgttggtttcaaaacgaattcgcgtcactaatgaggagaatgcctaccttgatattaaa
ggtgcttggcagttaaaaccttctgaactggcgattttaaagccattggcgatgtggcgt
tatcgtgaagcaatcaaacgagatttagcgctgaactttatcttcaaagaaggtgaccta
ttaacagtcgctcgtcttggcttaactaactttaagaagatggaagcggaagatattgat
atccgagcgattaaccgccatggcgcgaagattgccgctattgttaaacaagcgaagcaa
acaccttctgaagagtatccagcaaaaattgaacgcttaatggattatccaggttacaaa
caagtcttcaaaaatatgaaagacatagtgaaatcggcgtcgcagaagtctggcttagcg
acggagttccttgcttctaaaaagcagattaatcagctgatcagttgggtgtggaaaaaa
gattgcgatccagaagtgttgcctgacttgatgcagggctggcgcttggacctgctcggc
gacaagatgaacaaagcattaaagtaa
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