Vescimonas fastidiosa: MM35RIKEN_02090
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Entry
MM35RIKEN_02090 CDS
T07633
Symbol
polC
Name
(GenBank) DNA polymerase III PolC-type
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
vfa
Vescimonas fastidiosa
Pathway
vfa03030
DNA replication
vfa03430
Mismatch repair
vfa03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vfa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MM35RIKEN_02090 (polC)
03430 Mismatch repair
MM35RIKEN_02090 (polC)
03440 Homologous recombination
MM35RIKEN_02090 (polC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vfa03032
]
MM35RIKEN_02090 (polC)
03400 DNA repair and recombination proteins [BR:
vfa03400
]
MM35RIKEN_02090 (polC)
Enzymes [BR:
vfa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
MM35RIKEN_02090 (polC)
DNA replication proteins [BR:
vfa03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
MM35RIKEN_02090 (polC)
DNA repair and recombination proteins [BR:
vfa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
MM35RIKEN_02090 (polC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
PHP
DNA_pol3_finger
HHH_6
RNase_H_2
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
BCK78017
UniProt:
A0A810PVB6
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All DBs
Position
202443..206327
Genome browser
AA seq
1294 aa
AA seq
DB search
MLTGAKVVSGEVNRESRALEAEVECQHSVPEAAVTALEQLLQTHYDLRQIRLRFVSASGK
KSAEQVLLGKPIKGRPISMEGLNPKMGTVVVEGKVFFFDCHETRRPGVWVLTFDITDNQN
SVTVRKYMQTKELGSLQSAIAPGMWLRVQGIMELTRDGKDMQLAPFNIVKIGHEARKDTA
REKRVELHLHTRMSNMDALTDPAAVIKEAISWGHPAIALTDHGVCQAFPDAWHTAKGKIK
ILYGVEGYFINNLDDRVVVHGPADQDLDDEIVCFDIETTGLQVMKEAITEIGAVVLKNGE
IVDRFQTFVNPGRRLTPEIIGLTGITDAMLKDAPQPKEALEAFLKFVDGRPLAAHNAEFD
IGFIREGCRRAGLDFSPTYVDSLILAQNLLPELNKFKLDVVAEHLDLPAFNHHRASDDAG
MVGYMLIPFFEKMRRELGISRLQEINEKMLELRPLGNKNHRRPKHIIILAKNKLGLKHLY
QLVSASNLKYFKRFPIIPKTELAAHREGLIIGSACEAGELFRAVVEHKDWDELKRIASFY
DYLEIQPLCNNAFMLRSGEARDEEELRDFNRTIVRLGAELHKPVCATGDVHFMEPEDEIF
RHVLLASKKFPDADKSLPIYFKTTDEMLEEFSYLGEETAYEVVVKNTRAIADLVEEIELL
PPGQLFPPRLENSEQELHDMVWSKCHELYGENPPQLIVDRLNVELGGILGKYDVVYMSAQ
KLVQRSLENGYLVGSRGSVGSSLVAYMAGITEVNSLPPHYRCPRCKHTEFITDGSYGCGA
DMPDKICPQCGEKLVKDGFDIPFETFLGYGGGKVPDIDLNFSGEYQARAHRHAVEMFGET
QVFRAGTIGTLAEKTAYGFVRKYLEERDITAGNAEMNRLTLGCVGVRRTTGQHPGGLVVV
PDDMDVEDFTAVQHPADAEDAETITTHFEYHCMEDNLLKLDMLGHDDPSMIRMLEDLTGV
NARAIPLDDPDTMSIFTSSKVLGFENDELLGPTGAVAIPEFNTRFTRQMLIDTQPKDFNT
LVRLSGFSHGTDVWLGNARELIVGGTASVLQTVGCRDDIMLYLISMGLDPKMSFKIMEAV
RKGKVKKGGFQEGWVEAMEEHGVPQWYIESLAKIGYLFPKAHAVAYVMMAFRIAWFKVHE
PLAFYATFFTIRAKAFDAEFCCAGKEAVERKIHEIENNKDATAVEQNLLVTLEVCYEFYL
RGFHFDTIDIYRSDASKFIITEGGLLPPLISVHGLGEAAAQDTVEKRKGKTFISVEEFSM
CCSKLSKTHIEQLKALGAFAGMADTSQVNLFDGL
NT seq
3885 nt
NT seq
+upstream
nt +downstream
nt
atgctgacgggggccaaggtggtgagcggtgaggtgaatcgggagagccgcgccctggag
gcggaggtggagtgccagcattcggtgccggaggccgccgtgaccgccctggagcagctt
ttgcagacccactacgacctgcgccagatacggctgcgcttcgtgtctgccagcggaaaa
aagagcgcggagcaggtgctgctgggcaagcccatcaagggtcgacccatctccatggag
gggctgaaccctaagatgggcaccgtggtggtggagggcaaggtattcttctttgactgc
cacgagacccggcggcccggggtgtgggtcctgacctttgacataacggataaccaaaac
tccgtcaccgtccgcaagtatatgcagaccaaggagctgggcagcctgcaaagcgccatc
gccccgggtatgtggctgcgggtccaggggatcatggagctgaccagggacggaaaggat
atgcagctggcccccttcaacatcgtgaagatcggccacgaggcccggaaggatacggcc
agggagaagcgggtggagttgcacctgcacacccgtatgtccaacatggacgccctaaca
gacccggcggcggtgatcaaggaggccatttcctggggccacccggccattgccctcacc
gaccacggggtgtgccaggcctttcccgatgcctggcacacggccaagggaaagattaaa
attctctatggcgtagaggggtactttatcaacaatctggacgatcgggtggtggtacac
ggcccggcggaccaggatcttgacgatgagatcgtctgcttcgacattgagaccacgggc
ctgcaggtgatgaaggaggccatcacggagatcggcgcggtggtgctgaaaaacggggaa
attgtggaccgctttcagacctttgtaaaccccggccgccggctgaccccggaaattatc
ggcctcacgggcatcaccgacgctatgctcaaggacgcgccccagcccaaagaggccttg
gaggcgttcctgaaattcgtagatgggcggcccctggcggcccacaacgcggagtttgac
ataggcttcattcgggaggggtgccgccgggcgggactggatttttctcccacctatgtg
gactccctgattctggcccaaaatctgctgccggagctgaataaatttaagctggatgtg
gtggcggagcacctggatctgcccgcctttaatcaccaccgcgcctcggacgatgcaggc
atggtgggctatatgcttatcccctttttcgagaaaatgcgccgggagctgggcatcagc
cgcctgcaggaaataaacgaaaaaatgctggagctgcggcccttgggcaataagaaccac
cgcagacccaagcacattattattttggcgaaaaacaagctggggctcaagcacctgtat
cagctggtgtcggcctccaacctgaagtattttaagcgcttccccatcattcccaagacc
gagctggcggcccaccgggaggggcttatcatcggctccgcctgcgaggccggggagctt
ttccgggcggtggtggagcacaaggactgggacgagctgaagcgcatcgcctccttttac
gactacctggaaatccagcccctgtgcaacaacgccttcatgctgcgcagcggcgaggcc
cgggacgaggaggagctgcgggacttcaaccgcaccatcgtccgcctgggcgcagagctt
cataagcccgtctgcgccaccggagatgtgcatttcatggagccggaggacgagattttc
cgccatgtgctcctggccagtaaaaaattccccgacgcggacaagagcctgcccatttac
ttcaagaccaccgacgaaatgctggaggaattttcctatctgggagaggagaccgcctac
gaggtggtggtgaaaaatacccgggccattgcagatctggtggaggagatcgagctgctg
cctccgggacagcttttcccgccgcgactggaaaattccgagcaggagcttcacgacatg
gtgtggagcaagtgccatgagctctacggggaaaatccgccccagctcatcgtggaccgg
ctgaatgtggagctgggcggcattttgggcaagtacgatgtggtgtatatgtcggcccag
aagctggtgcagcggagcctggaaaacgggtatctggtgggctcccgagggtccgtgggg
tcgtcgctggtcgcctatatggcgggcatcacagaggtaaactccctgccgccccactac
cgctgcccccggtgcaagcacacggagttcatcaccgacggcagctacggctgcggcgcg
gatatgccggataaaatctgcccccagtgcggggaaaagctggtcaaggacggctttgac
atcccctttgagaccttcctgggctacggcggcggcaaggtgccggatattgacctgaac
ttctccggggaataccaggcccgagcccaccgccacgcggtggagatgttcggcgagacc
caggtgttccgggccgggaccatcggtaccctggcggaaaagaccgcctacggctttgtg
cgaaaatatctggaggagcgggacatcaccgccggaaacgcggagatgaaccgcctgacc
ctgggctgcgtgggcgtgcggcgcaccacgggccagcaccccggcggcctggtggtggtg
ccggacgatatggatgtggaggatttcaccgccgtgcagcacccggcagatgccgaggat
gccgagaccatcaccacccattttgaataccactgcatggaggacaacctcctgaagctg
gatatgctgggccacgatgacccgtccatgatccgtatgctggaggacctcaccggggtc
aatgcccgggctattcccctggacgacccggataccatgagcatttttacctcctctaag
gtgctgggctttgaaaatgacgagcttctgggccccaccggcgccgtggccatcccggag
ttcaatacccgtttcacccggcagatgctcatagatacccagcccaaggattttaacacc
ctggtgcggctttcgggcttttcccacggcacggatgtgtggcttggaaacgcccgggag
ctgatcgtgggcggtacggcctcggttctgcagaccgtgggctgccgtgacgacattatg
ctctatctcatctccatgggtctggacccgaaaatgagctttaagatcatggaggccgtg
cgaaagggcaaggtgaaaaagggcggcttccaggagggctgggtggaggccatggaggag
cacggggtgccccagtggtacatcgagtccctggccaagatcggctatcttttccccaag
gcccacgccgtggcctatgtgatgatggccttccgcatcgcctggttcaaggtccatgag
cccttggccttctatgcaaccttcttcaccatccgggccaaggcctttgacgcggagttt
tgctgcgccggaaaggaggccgtggagcgaaaaattcacgagatcgagaacaacaaggac
gccaccgccgtggagcagaacctcctggtgaccctggaggtgtgctacgagttttatctc
cggggcttccactttgataccatcgacatttaccggtccgatgcctcgaaattcatcatc
accgagggcgggctgctgccgccgctgatctccgtccatggactgggggaggccgccgcc
caggacacggtggaaaagcgcaagggcaagaccttcatctctgtggaggagttttccatg
tgctgcagcaagctgtccaagacccatatcgagcagctgaaggccctgggggcctttgcg
gggatggcggacaccagccaggtgaatttgtttgacggcttgtaa
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