Vescimonas fastidiosa: MM35RIKEN_04470
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Entry
MM35RIKEN_04470 CDS
T07633
Symbol
addB
Name
(GenBank) ATP-dependent helicase/deoxyribonuclease subunit B
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
vfa
Vescimonas fastidiosa
Brite
KEGG Orthology (KO) [BR:
vfa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vfa03400
]
MM35RIKEN_04470 (addB)
Enzymes [BR:
vfa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MM35RIKEN_04470 (addB)
DNA repair and recombination proteins [BR:
vfa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
MM35RIKEN_04470 (addB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ADDB_N
PDDEXK_1
UvrD_C
DUF6882
Motif
Other DBs
NCBI-ProteinID:
BCK78255
UniProt:
A0A810PVG9
LinkDB
All DBs
Position
457327..460650
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AA seq
1107 aa
AA seq
DB search
MLQLWIGRAGTGKSERILETMKRDCRTRGQVLIVPEHVSHEAEVALCRALGDTASRYAEV
LSLRNLSGRVLGEVGGLSDFTLDGGGKLLTMRMALQEVAGSLHVFNNPSRRAAFLEQLVA
LMDELYAYEIAPEEMYVRVQEAPGQRGDKLRDVALLYAAYDARLREGGRDARSRVQKLRD
ALPQSDYLRDKDVFFDGFSYFNKVEEGILETVLQQAHSVTVTLLGDRSASDIFQNAFRQR
QRLVRMARQMGQRCEMEFMERQENSALGHLERYFFGAAAPERSGGEDQVKLYEATTAYAE
VEYAAAQIRQMLSRGYRCRDIAVTARNLEEYGPLLEHIFARDGIPVYMSRRSDILQKPPL
LLILGALDAVTGGFEYEDMFRYLKTGLAGIDRAECDALENYVVLWGIRGKMWLRDVAWTA
NPDGYGADMTPERQARLDEINTIREKVRLPLLALYESMGAPSAAVKKAEAVYRFAQQAGV
PELLQQQVQHLLETGRVQTAEEYRQLWEIFCGVLDQFAEILGDTPLSGEEFCRMLRLVLT
QYSVATIPATLDQVKVSEMTRADRRRVRSLFLLGCNDHVLPQVNQSGGILDRKDRSFLQE
HDLPLADASFDELDNELQNIYSALTQPTERLCVSYPTVSLEGSALRPAFVVERIRRLLPQ
VPVQKEDGAYRLGVPATALEIAGRYPGSALADYFRRDGENGRVLEAIARAEQMERGRLSP
EAVRALYGTQVQMSASRMDRMKSCHFGYFMEYGLRAKERKTAGFQAPEIGTFLHYLLENV
LRTVRDRGGFACVETEELDALVEQFTGEFARTKIDRYSEKSARFRYLFERLQRTACAVVR
SIADEMRQSDFKLLEFEMNFGGKDADLPAVCVEREGISLRVVGKVDRVDGWVKDGRLYLR
VVDYKTGKKSFDLSEVQYGLGIQMLLYLFALEKEGQAHFGMPVVPAGLLYLPAKDVIVRE
KRGASEEKIRSDVQAELRRSGLLLQDAEVLQAMEHSALEKPVYLPITLKKDGTITDGVAT
AYQLGQLGKYTEHLLEQIAGELARGNVDADPVQRSQQDSACRYCAYASACYFRPGVGRDR
RRYIRNTPTAQVWENMEKELGEEAHHG
NT seq
3324 nt
NT seq
+upstream
nt +downstream
nt
atgctgcagctttggatcggccgggcaggcacgggaaaatccgagcggattctggagacg
atgaagcgtgactgccgcacccggggacaggtgcttattgttccggagcatgtgtcccac
gaggcggaggtggcgctgtgccgggctttgggcgacacagccagccggtatgcagaggtg
ctgagtttgcgtaacctttccgggcgcgtgctgggagaggtgggtggcttgtctgatttc
accctggacgggggcggcaagctgctgaccatgcgcatggcactgcaagaggtggccgga
agcctccatgtgttcaataatccctcccggcgggcggcgtttttggagcagcttgtggcc
ctgatggacgagctgtacgcctacgaaatcgccccggaggagatgtatgtccgggtgcag
gaggccccgggacagcgaggggacaagctgcgggatgtggccctgctctacgctgcctac
gacgctcggctccgggaaggggggcgggatgcccgatcccgggtgcagaagcttcgggat
gccctgccgcagtcagactatctgcgggataaagatgtgttttttgacggcttctcctat
tttaataaagtggaagagggaattttggagacggtcttgcagcaggcacacagcgttact
gtgacccttttgggggaccgctctgcttccgacatattccaaaacgccttccgacagcgc
cagaggctcgtgcgcatggcccggcagatggggcagcggtgcgagatggagtttatggag
cgtcaggaaaattcggccttgggacatctggaacggtactttttcggggcggcggccccg
gagcggtccggcggagaggaccaggtgaagctgtacgaggctaccaccgcctacgcggag
gtggagtatgcggcggcacaaatccggcagatgctttcccggggctatcgctgccgggac
atcgccgtgacagcccggaacctggaggagtacggcccgctgctggagcatatttttgcc
cgggacggcattccggtctatatgagccgccgcagcgatatcctgcaaaagccgccgctg
ctgctgattctgggcgcactggacgccgtgaccggcggctttgaatacgaggatatgttc
cgatacctgaaaaccggcctggcgggcatcgaccgggcggagtgcgacgcactggaaaac
tatgtggtcctgtgggggattcggggaaaaatgtggctgcgggatgtggcctggacggca
aatcccgatggatacggcgcggatatgaccccggagcgccaggcacggctggacgaaatc
aacaccattcgggaaaaggtacggctgccgctgctggccctgtacgagagcatgggtgcg
ccctcggcggcggtgaaaaaagcggaggctgtgtaccgctttgcccagcaggcaggggtg
ccggagcttttgcagcagcaggtgcagcaccttctggagaccggacgggtgcagacggca
gaggagtaccgccagctatgggaaattttctgcggcgtgctggaccagtttgcggagatc
ctgggcgatacgcctctgagcggggaggaattttgccggatgctacggctggtgctgacc
cagtacagcgtggccaccattccggccaccctggaccaggtgaaggtcagcgagatgacc
cgggccgaccgcagaagggtgcggtcacttttcctgctggggtgcaacgaccatgtgctg
ccccaggtgaaccagagcggcggcatattggaccgcaaggacagaagctttttgcaggag
catgacctgccattggcggatgcatcctttgacgaattggacaatgaattgcaaaatatt
tactcggccctgacccagcccacggagcggctgtgcgtgagctatcccacggtgtcactg
gaggggagcgccctgcgccctgccttcgtggtggagcgtatccggcggcttttgccccag
gtgccggtgcaaaaggaggatggcgcataccgtctcggtgtgcctgccacggctttggaa
atcgcgggacgctatccgggcagcgctctggcggactatttccggcgggacggagaaaac
ggtcgggtgctggaggccatcgcccgggcggagcagatggagcggggacggctgtcaccg
gaggcggtgcgtgccctgtacggaacccaggtgcagatgtccgcgtcccggatggatcgc
atgaaaagctgtcatttcggctacttcatggagtacggtctgcgggctaaggagcgaaaa
accgccggattccaggcaccggaaatcggaaccttcctccactatctgctggaaaatgtg
ctgcgcacggttcgggaccggggcggctttgcctgcgtggagacggaggagctggacgca
ctggtggagcagttcaccggagaattcgcccggacgaaaatcgatcggtacagcgagaaa
agcgcgcggttccgctatctgtttgagcggctgcaaaggaccgcctgcgcagtggtgcgg
agcattgccgatgaaatgcggcagtcggactttaagctgctggagttcgagatgaatttc
ggcgggaaggatgcggatctgccggcagtctgcgtggagcgggaggggatctccctgcgg
gtcgtgggcaaggtggaccgagtggacggctgggtaaaggacgggaggctctacctgcgg
gtggtggactataagaccgggaaaaaatcctttgacctcagcgaggtgcagtacggcttg
ggcatacagatgctgctgtacctctttgccctggaaaaggaggggcaggcacacttcgga
atgccggtggtgccggcggggctgctgtatctcccggcaaaggatgtgatcgtgcgagag
aagcggggagcatcggaggagaaaatccgcagtgatgtgcaggcggagctgcggcgcagc
ggtctgcttttgcaggatgcggaggttttgcaggctatggagcacagcgccctggaaaag
ccggtatatcttccgattacccttaaaaaggacgggaccatcaccgacggagtggccacc
gcttaccagctggggcagctgggaaagtacacggagcatctgctggaacagatcgccgga
gagctggcccggggcaatgtggacgcggacccggtgcagcgatcccagcaggacagtgcc
tgccgctactgcgcctatgcctcggcctgctatttccggcccggtgtgggcagggatcgg
cggcggtacatacgaaacaccccgacggcgcaggtgtgggagaatatggagaaggaatta
ggagaggaggcgcaccatgggtga
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