Vescimonas fastidiosa: MM35RIKEN_05860
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Entry
MM35RIKEN_05860 CDS
T07633
Symbol
dnaE
Name
(GenBank) DNA-directed DNA polymerase
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
vfa
Vescimonas fastidiosa
Pathway
vfa03030
DNA replication
vfa03430
Mismatch repair
vfa03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vfa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MM35RIKEN_05860 (dnaE)
03430 Mismatch repair
MM35RIKEN_05860 (dnaE)
03440 Homologous recombination
MM35RIKEN_05860 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vfa03032
]
MM35RIKEN_05860 (dnaE)
03400 DNA repair and recombination proteins [BR:
vfa03400
]
MM35RIKEN_05860 (dnaE)
Enzymes [BR:
vfa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
MM35RIKEN_05860 (dnaE)
DNA replication proteins [BR:
vfa03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
MM35RIKEN_05860 (dnaE)
DNA repair and recombination proteins [BR:
vfa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
MM35RIKEN_05860 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
PHP
DNA_pol3_finger
HHH_6
tRNA_anti-codon
tRNA_anti_2
DUF655
Motif
Other DBs
NCBI-ProteinID:
BCK78394
UniProt:
A0A810PR65
LinkDB
All DBs
Position
596271..599750
Genome browser
AA seq
1159 aa
AA seq
DB search
MSFVHLHVHTEYSLLDGACRIRDLPGRLKELGQTACAITDHGVMYGAIDFYRACKAEGIH
PIIGCEVYVAARTRFDKIHEYDAESRHLVLLCKNETGYRNLSYMVSQAFVEGFYIKPRID
LDLLRTHSEGLIALSACLAGEIPKRILHRNYDGAKEYALQMQEIFGQDNFYLELQDHGIP
EQTEVNRSLLKIHQETGIPLVCTNDAHYLRPEDAESHDILLCIQTGKTVDDENRMRYEPR
NFYIRSTEEMEALFSAYPEAVENTQRIADRCQLDFTFGKYHLPEFKLPPGFDSPTYLRKL
CDEGFAQRYGVEKESYRKQLIYELDMIEKMGFTDYFLIVSDFVRYAKSVGIPVGPGRGSA
AGSMVSYCLHITDIDPMEYNLYFERFLNPERVSMPDIDMDFGDTRREEVVDYVRRKYGDD
HVAQIVTFGTMAARGAIRDVGRVMKIPYNEVDAVAKLVPTTLHITLDDALRLSKQLSDLY
ASNEQIHRLIDTAKALEGMPRHASTHAAGVVITKRPVYEYVPLARNDESVVCQYTMVTLE
ELGLLKMDFLGLRNLTVLDDAIKMLPDKNFDLQKIPMDDPEVFGMLTQGKTSGVFQMEST
GMTGVCLGLKPQSIEDITAIIALYRPGPMESIPRFIACKQDPSLISYKHPSLEPILSVTY
GCIVYQEQVIQIFQQLGGYSLGQADMVRRAISKKKAKEIEKERYSFVHGDPERHIKGCIA
GGIPEATAEAIYDEIYDFANYAFNKAHAVSYAVVAYQTAYFKCHYPKEYMAALLTSVLNN
SDKVAEYITECRECSIPVLPPDINHSYDGFTVEGENIRFGLVAIKNIGRGFIQTLIKRRD
KDGPFTSFQDFCQRMNDAADMNKRAVENLIRSGAFDSLGAKRSQLIKVFESVMDSVALSY
RQNLEGQIDMFSMGPAMSQKLQHIHLPDIPEFSAMELMTMEKETTGLFLSGHPMRDYREL
AKASGAVPIQKILADFEQEQGPTRFADGQSICIAGVVTSSKTRPTKNNSIMAYVTVEDET
GSIELLCFQRSIDQFGSYMQVNLPVIVTGRLSVRDEKPPQILCDTIQPLEGQKSILYLQG
KRVPEKQTQELILKVPGLDSREFRHLQLVFTMFEGDMPVKIRMADTGKLFGATCLNHPAL
LEECQEWLGKENVVLRAKK
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgtcattcgtacatcttcatgtacatacagagtatagccttttggacggtgcctgccgc
atccgcgacctgccggggcggctcaaggagttgggccaaaccgcctgcgccatcaccgac
cacggcgtcatgtacggtgccattgatttttatcgggcctgcaaggcagagggcattcat
cccatcatcggctgcgaggtctatgtggccgcccgtacgcggttcgataagatccacgag
tacgatgccgagtcccgccacctggtgcttttatgtaaaaatgagaccggctaccgtaac
ctctcctacatggtcagccaggcttttgtggagggcttttatataaagccccgcatcgac
ctggatctgctgcgcacacattccgagggcctcattgctctctctgcgtgcctagccggc
gaaatccccaagcgcatcctccaccgcaactatgacggtgccaaggaatatgccctgcaa
atgcaggaaatattcggtcaggataatttctatctggagcttcaggaccacggtattccc
gagcagacggaggtcaaccgcagtctgctgaaaatacaccaggagacgggcatccccctg
gtttgcaccaacgacgcccactatctccgcccggaggacgccgagagccacgacatcctc
ctgtgcatccaaaccggtaagaccgtggacgatgaaaaccgtatgcgctatgagccccgg
aatttctatattcgctccactgaggagatggaggctctgttttctgcctatcccgaggcc
gtggaaaacacccagcgcattgccgatcgctgccagctggactttaccttcggtaagtat
cacctgccggagttcaagctgcccccgggcttcgattctcccacctacctgcgcaagctc
tgcgacgagggctttgcccagcggtatggggtggagaaggagagctatcgcaagcagctt
atttacgagctggatatgatcgagaaaatgggctttacggactattttcttatcgtctcc
gactttgtccgctatgctaagagtgtgggcatccccgtgggtcccggccgcggctccgcc
gccggaagcatggtgtcctactgcctgcatatcacggacattgaccccatggaatataac
ctctattttgagcgtttcctgaaccccgagcgtgtgtccatgcccgatattgacatggac
ttcggagacacccgccgcgaggaagtggtggactatgtccgccgcaagtatggcgatgac
catgtggcacaaatcgttaccttcggcaccatggccgcccggggcgccatccgtgatgta
ggccgggtgatgaaaataccctataacgaggtggatgcggtagctaagcttgttcccacc
actctgcacatcaccctggatgatgccctgcgcctatccaaacagctttcggacctctat
gcgtccaatgagcagatacaccgcctgatcgacaccgccaaggccctggagggtatgccc
cgccacgcctctacccacgccgccggtgtggtcattaccaagcgcccggtatatgaatat
gttcccctggcccgaaacgatgagtctgtcgtctgccagtacaccatggtcaccttagag
gagctgggtctgctgaaaatggactttttgggcttgagaaacctgacggtgctggacgac
gccattaagatgctgccggataaaaacttcgatctgcagaagatacctatggatgatccg
gaggtttttggtatgctaacccagggcaagacctccggtgtgttccagatggagtccacg
ggcatgaccggcgtttgcctgggcctcaagccccagagcatcgaggatatcaccgccatc
atagccctttaccgccccggccccatggagtctatcccccgttttatcgcctgtaagcag
gacccctcgctcatttcctataaacatccgtctctggaaccgattttgtccgtcacctac
ggctgcatcgtataccaggagcaagttattcagattttccagcagttaggcggctattct
ctggggcaggcggatatggtgcgccgggccatctctaagaaaaaggccaaggagatcgaa
aaggagcggtattccttcgtccacggcgatccggagcggcacatcaagggctgcatcgcc
ggcggtatccccgaagccaccgccgaagccatctacgatgaaatttacgacttcgccaac
tatgccttcaataaggcccacgccgtcagctatgcggtggttgcttaccaaacggcctat
ttcaagtgccattatcccaaggaatatatggcggcccttctgacctccgtgctgaataac
tcagataaggtagctgagtatatcaccgagtgccgggagtgcagcatccccgttctaccc
ccggacatcaaccactcttatgacggctttacggtagagggggagaacatccgcttcggc
ctggtggccatcaagaatattggccgcggctttatccagacgcttattaagcgccgtgac
aaggacggtccctttacatccttccaggatttctgccagcgtatgaatgacgcggcggac
atgaataagcgggccgtggagaacctgatccgcagcggcgcctttgattccctgggtgcc
aagcgctcccagctcatcaaggttttcgagtccgtgatggacagtgtggccctttcctac
aggcagaacctggaggggcaaatagatatgttcagcatgggcccggcgatgtcccaaaag
ctccagcatatccacctgccggacatcccggagttttccgccatggagctgatgaccatg
gaaaaggagaccacgggtcttttcctctccggccaccccatgcgtgactatcgggagttg
gccaaagcttccggcgccgtgcccattcaaaagattttggcggattttgagcaggagcag
ggccctacccgctttgccgacggtcaatccatctgcatagccggggtcgtcacctccagc
aaaacccgccccacgaaaaataattccatcatggcctatgtgacggtggaggacgaaacc
ggctccattgaactgctgtgcttccagcgctccatcgaccagttcggctcctatatgcag
gtaaatcttccggttatcgtcacgggccgcctgagcgtgcgggatgaaaagccgccgcag
attttgtgcgataccatccagcctctggagggtcaaaagagcatcctctatctgcaaggc
aaacgcgttcccgagaagcagacccaagagcttattctcaaggtcccgggccttgatagc
cgcgagttccggcatttgcagttggttttcaccatgttcgagggggatatgcccgtaaaa
attcgtatggcggacaccggcaagctcttcggcgccacctgcctgaaccatcccgccctc
ctggaggagtgccaggagtggctgggcaaggagaatgtggtgcttcgtgccaaaaaataa
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