Vescimonas fastidiosa: MM35RIKEN_10960
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Entry
MM35RIKEN_10960 CDS
T07633
Name
(GenBank) hypothetical protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
vfa
Vescimonas fastidiosa
Pathway
vfa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vfa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MM35RIKEN_10960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vfa03019
]
MM35RIKEN_10960
03009 Ribosome biogenesis [BR:
vfa03009
]
MM35RIKEN_10960
Enzymes [BR:
vfa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MM35RIKEN_10960
Messenger RNA biogenesis [BR:
vfa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MM35RIKEN_10960
Ribosome biogenesis [BR:
vfa03009
]
Prokaryotic type
rRNA helicases
MM35RIKEN_10960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
DUF4391
AAA_30
NAT10_TcmA_helicase
CMS1
TA0956
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
BCK78904
UniProt:
A0A810PSY1
LinkDB
All DBs
Position
complement(1100891..1102051)
Genome browser
AA seq
386 aa
AA seq
DB search
MDITQGVPFDSFGLSEPTMRAIRNKGYTVSTPVQAGCIPPMLAGKDVIAKAPTGTGKTMA
FGLPIIERIDRESEAVQALILAPTRELAMQITQELREVAVCHEGVRVVCLYGGEPIGKQI
NALKRRPQIVVATPGRLSDHMKRRTVSVKEVQTVVLDEADRMLDMGFIHDVTRILDKVPN
RKNLGMFSATISREVMDISWVYQRDPEEITVRATQENKPDILQYRLEVPSDQKVDTIARI
IAGENLERVMCFCNTKGSTERLTKFLQMRGLDAQCIHGDIPQRKREAVMALFREGKLHVF
VATDVAARGIDVDDVDAVFNYDVPDENEYYIHRIGRTGRAKRHGVAYTLLSDFPSRMRLD
DIARNTRSQIIPATVDERGCVVPEKK
NT seq
1161 nt
NT seq
+upstream
nt +downstream
nt
atggatattacccagggcgtgccctttgacagcttcggcctttccgagcccactatgcgc
gccatcagaaacaaaggttataccgtttccacccctgtccaggccgggtgcattcccccc
atgctggccgggaaggatgtcatcgccaaggcccccacgggcaccggcaagaccatggcc
ttcggcctgcccatcatcgagcgtatcgaccgggagagcgaggcggtccaggccctgatc
ctggcccccacccgggagctggccatgcagatcacccaggagctgcgggaggtggccgtg
tgccacgagggcgtgcgggtggtttgcctgtacggcggtgagcccatcggcaagcagatc
aacgccctcaagcgtaggcctcagatcgtggtggccacccctggtcgcctgtccgaccac
atgaagcgccgcaccgtttcggtgaaggaggtgcagaccgtggtgctggacgaggccgac
cgtatgctggacatgggctttatccacgatgtcacccgcattctggacaaggttcccaac
cgtaaaaatctcggcatgttctccgccaccatttcccgggaagttatggacatctcctgg
gtctaccagcgggaccccgaggagatcactgtccgggccacccaggagaataagcccgac
atcctgcagtatcgtctggaggtgccctcggaccaaaaggtagataccattgcccgcatc
atcgccggggagaacctggagcgcgtcatgtgcttctgcaataccaagggttccacggag
cgcctgaccaagttcctgcaaatgcgcggcctggacgcccagtgcatccacggcgacatc
ccccagcgcaagcgcgaggcggtgatggccctgttccgggagggaaagctccatgtattc
gttgcaacggatgtggccgcccggggcatagatgtagatgatgtggatgcggtgtttaac
tacgatgtacccgatgaaaacgagtattacatccaccgcatcggccgcacgggtcgtgcc
aagcgccacggcgtggcctataccttactgtcggatttccccagccgtatgcggctggac
gacatcgcccgcaatacccgcagccagatcatccccgccacggtggatgaaaggggctgc
gtggtgccggagaagaagtga
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