Vescimonas fastidiosa: MM35RIKEN_15880
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Entry
MM35RIKEN_15880 CDS
T07633
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
vfa
Vescimonas fastidiosa
Pathway
vfa03410
Base excision repair
vfa03430
Mismatch repair
vfa03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vfa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
MM35RIKEN_15880 (recJ)
03430 Mismatch repair
MM35RIKEN_15880 (recJ)
03440 Homologous recombination
MM35RIKEN_15880 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vfa03400
]
MM35RIKEN_15880 (recJ)
DNA repair and recombination proteins [BR:
vfa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
MM35RIKEN_15880 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
MM35RIKEN_15880 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MM35RIKEN_15880 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
BCK79396
UniProt:
A0A810Q0G6
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All DBs
Position
pMM35_01:177527..179605
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AA seq
692 aa
AA seq
DB search
MKFEKWNLPAAAPAVAELEQAGYPALLSAVLAAHGITDDAAARAFLQIDDTLTLSPFLMK
DMDRAVRRIRQAMEKGQHIAVFGDYDVDGITATAILVDYLRRCGAEVSHYIPRRIEDGYG
LSADALGTLRSRGVELVVSVDCGITGVEEVDYAASLGMDVVVTDHHECKEELPRAAAVVD
PHRPDCPYPFKHLAGCGVALKLVLALGGEENREALLTRYCPLAAVGTVADVMLMTGENRT
IVARGLSHIADSDFIGLRALLQETGLLQKEITSVQIGFVLAPRINAAGRMGEADRAADLM
LCKDPIRAQALARELCDLNRQRQAVEQEIYAQAIDMIEAMPAQERHALVLADRRWHQGVV
GIVASRLSEKYACPSFMIHISGHTGKGSCRSWGGFNLFAALEECSDLLLGFGGHELAAGF
TIEEENIPAFRARMNQCVLRFMDGRPATSALDVDVMLRRPELVTLWEVEQLRRLEPYGNG
NGRPLFCLPGVTLERVQGVGQNRHLKLLFSKGASQLEGIFFSVTPQQCPVRPGERVDVAF
YLQINEFRGSRTVQLQVVDLRPSLQCSAREEESLLLVRRLKQGQAPAYKDALRMLPSRQQ
CVAAWRYLQQAAGGGPVQLFTLPFLRRLSAAIPGTDSFLRGCFCMELFCERGLLQRKTDS
EHMTLCLSPGQEKVDLERSVYWQALVDNIKGK
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttgaaaagtggaatcttcccgccgctgcccctgcggtcgcggagctggagcag
gccggctacccggctctgctgtcggcggtgctggccgcccacggcattaccgatgatgcc
gccgcccgggctttcctgcagatcgacgacaccctcaccctctcccccttcctgatgaag
gacatggatcgggccgtccggcgcatccggcaggctatggagaagggccagcatatcgcc
gttttcggcgactatgatgtggacggcatcaccgccactgccatactggtggactatctg
cgccgctgcggcgccgaggtcagccactatatccctcggcgcatcgaggacggctacggt
ctctccgcagacgccttaggcaccctccgcagtcggggcgtggagctggtggtcagcgtg
gactgcggcatcaccggggtggaggaggtggactatgccgcctccctgggcatggatgtg
gtggtgacggaccaccacgagtgcaaggaggagctgccccgggccgcggcggtggtagac
ccccaccggcccgactgcccctatcccttcaagcacctggccggctgcggcgtggccctg
aagctggtgctggccctgggcggcgaagaaaaccgggaggccctgctcacccgatactgc
cccctggccgccgtgggcaccgtggcggatgtgatgctcatgaccggggaaaaccgcacc
attgtggcccgaggtctttcccatattgcagatagcgacttcatcggcctccgggccctc
ctacaggagacgggcctgctgcaaaaggagatcacctccgtgcagatcggctttgtcctg
gccccccgtatcaacgccgccgggcgcatgggcgaggcggaccgggcggcggacctgatg
ctgtgcaaggaccccatccgggcccaggctctggcccgagagctgtgcgacctgaatcgc
cagcgccaggccgtggagcaggagatttatgcccaggccatcgacatgatcgaagccatg
cccgcccaggagcgccacgccttggtcctggcggaccgccggtggcaccagggggtggtg
ggcatcgtggcctcccgtctcagcgagaaatacgcctgccccagctttatgatccacatt
tccggccacaccggcaaaggctcctgccgcagctgggggggctttaacctctttgccgcc
ctggaagagtgcagcgacctgctcctgggcttcggcggccacgagctggccgcaggcttt
accattgaagaagaaaatatccccgccttccgggcccggatgaaccaatgcgttctgcgc
tttatggatggccgccccgccacctccgccctggatgtggatgtgatgctgcgccgcccg
gagctggtgacgctgtgggaggtggagcagctccgccgcctggaaccctacggaaacggc
aacggtcgtcccctcttctgcctgccgggcgtgaccctggagcgggtgcagggcgtaggg
cagaaccgtcacctgaagctgctcttttccaagggggcgtcacagctggagggcatattc
ttttccgttactccccagcagtgtccggttcggcccggagagcgggtggatgtggccttt
tatttgcagataaatgagtttcgcggcagccgcacggtgcagctccaggtggtagacctg
cgcccctccctgcaatgctcggcccgggaggaggagtcgctgctgcttgtgcgcagactc
aagcagggccaggctccggcgtataaggacgcccttcgtatgctgccctcccggcagcag
tgtgtggccgcctggcggtatttgcagcaggcggcaggcggcggcccggtacagctgttc
accctgccgtttctgcgcaggctctccgccgccatccccggcacagactcgtttctgcgg
ggctgcttctgcatggagctgttttgcgagcggggtcttttgcagcgcaagacagacagc
gagcatatgaccctgtgcctgtcccccgggcaggaaaaagtggacctggagcgctctgtt
tactggcaggcgcttgtggataatatcaaaggaaagtga
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