Vescimonas fastidiosa: MM35RIKEN_19630
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Entry
MM35RIKEN_19630 CDS
T07633
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
vfa
Vescimonas fastidiosa
Pathway
vfa03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vfa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MM35RIKEN_19630 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vfa03021
]
MM35RIKEN_19630 (rpoC)
03400 DNA repair and recombination proteins [BR:
vfa03400
]
MM35RIKEN_19630 (rpoC)
Enzymes [BR:
vfa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MM35RIKEN_19630 (rpoC)
Transcription machinery [BR:
vfa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MM35RIKEN_19630 (rpoC)
DNA repair and recombination proteins [BR:
vfa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MM35RIKEN_19630 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
BCK79771
UniProt:
A0A810Q2T9
LinkDB
All DBs
Position
pMM35_01:complement(535696..539409)
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AA seq
1237 aa
AA seq
DB search
MSYATFDAIKIGIASPEMIREWSFGEVKKPETINYRTLKPERDGLFCEKIFGPTKDWECH
CGKYKKIRFKGKICDRCGVEVTRAKVRRERMGHIELATPVSHIWYFKGIPSRMGLLLDIS
PRILEKVLYFAAYIVTDPGETPLVRNQILSEKEYRDMREKYENDFDAGMGAEAVKKLLQQ
VDLESLSQELHTELKTVSGQKKARVVKRLEVVDAFRLSGNKPEWMIIDVLPVIPPELRPM
VQLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPDIIVRNEKRMLQEAVDALIDNGRR
GRPVTGANNRALKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKIYQCGVPKEM
AVELFRPFIMKKLVEDGVANNIKSAKKMVDKGVTEVWDALDVIIKDHPVMLNRAPTLHRL
GIQAFEPVLVDGRALKLHPLNCTAFNADFDGDQMAIHVPLSAEAQAEARLLMLSANNLLR
PQDGGPVTVPTQDMVLGSYYLTIERFENGMSQLENDEFWPENIDFSLAGKSYDELTDEEK
SHNPLNIYRNEDEVLMAYNEHIIGIHQPVWVRVEKELDGVKTAHVVRGSAGRIIFNRNIP
QNLGFVKRLNEDGTPTDKFFDYEITEICGKKLLGKIVDRTIKQYGFTVAAEVLDNIKATG
YKYSTRASITISIADMTVPEKKYQLIAETEQRVVDIEDQYNMGFITDEERYKLVVREWEK
TTADVTDALTASLDKYNPIFMMADSGARGSMKQIRQLTGMRGLMANTAGKTIEIPIKANF
REGMSVLDYFTSSRGARKGLADTALRTADSGYLTRRMVDVCQDVIIREDDCGVDKGIVVS
EIEENGQVIEKFSERLKGRFPVRDILKPGTDEVLISKDHMMTEDDAALLEKFDIHSAEIR
TVLTCKAHSGICAKCYGMNLATSKPVAPGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGG
DITQGLPRVEELFEARKPKKMATLSEIAGKVRFEDAAKGSLLNIIVTADDGDTRTYSMPH
TGLQVRDGDVIEKGKQLQDGALNPHDVLRIRGASAVHNYLIQEVLKVYRQQGVDINDKHI
EVIVRQMMRKVRVEEAGDTNLLSGAMADVLEVELENAKLRDRIAAGEVNAETGEPLKEAT
YTQLLMGITKASLATDSFLSAASFQETTKVLTEAAIKGKVDHLVGLKENVIIGKLIPAGA
GLGAYRHFAEELVPEKEEPAHEVQIISNAVAAAHTED
NT seq
3714 nt
NT seq
+upstream
nt +downstream
nt
atgagttacgcaacatttgatgctattaaaatcggtatcgcttctccggaaatgatccgt
gagtggtccttcggcgaggtgaaaaagccggagaccatcaactaccgcaccctcaagccc
gagcgggacggtctgttctgcgagaagatcttcgggcccaccaaggactgggagtgccac
tgcggcaagtataagaagatccgcttcaagggcaagatctgcgaccgctgcggcgtggag
gtcacccgtgccaaggtgcgccgggagcgcatgggccacattgagctggccacccccgtc
agccacatctggtacttcaagggcatcccctcccgcatgggtctgctgctggacatcagc
ccccggattttggagaaggtcctgtattttgccgcctatatcgtcaccgatcccggtgag
acgcctctggtacgcaatcagatcctctctgaaaaagagtaccgggatatgcgcgagaag
tatgagaacgacttcgatgccggcatgggcgccgaggccgtgaagaagctgctgcagcag
gtggatctggagtccctgagccaggagctgcacacggagctcaagaccgtttccggccag
aagaaggcccgggtcgtcaagcgcctggaggtagtagacgccttccgtctctccggcaac
aagcccgagtggatgattattgatgtgctgcccgtgatccccccggagctgcgccccatg
gtgcagctggacggcggccgcttcgccacctccgacctcaatgatctctaccgccgcgtt
atcaaccgcaataaccgtctgaagcgcctgctggagctgaaggccccggatattatcgtc
cgcaatgaaaagcgtatgcttcaggaggccgtggacgcgctgatcgacaatggccgccgt
ggccgtcccgtcaccggcgccaataaccgcgctctcaagtccctgagcgatatgctcaag
ggtaagcagggccgtttccgtcagaacctgctgggcaagcgtgtggactactccggccgc
agcgttatcgtggtaggccccgagctgaagatttaccagtgcggcgtgcccaaggagatg
gccgtggagctgttccgccccttcattatgaagaagctggtggaggacggcgtggccaat
aacatcaagtccgccaagaagatggtggataagggtgtcaccgaggtgtgggatgccctg
gatgtgatcatcaaggaccaccccgtcatgctcaaccgcgcccccaccctgcaccgcctg
ggcatccaggccttcgagccggtgctggtggatggccgcgctctgaagctgcaccccctg
aactgcaccgccttcaacgccgacttcgacggcgaccagatggccatccatgtgcccctg
tccgccgaggcccaggccgaggcccggctgctgatgctctcggccaataacctcctgcgt
ccccaggacggcggccccgtcaccgtgcctacccaggatatggtgctgggctcctactac
ctgaccattgagcgctttgaaaacggcatgagccagctggaaaacgacgagttctggccc
gagaatatcgacttctccctggccggtaagagctacgatgagctcaccgacgaggaaaag
tcccataaccccctgaatatctaccgcaatgaggatgaggtgctcatggcctataatgag
catatcatcggtatccaccagcccgtttgggtccgtgtggagaaggagctggacggcgtc
aagaccgcccatgtggtccggggctccgcaggccgcatcatcttcaaccgcaacattccc
cagaacctgggcttcgtaaagcggctgaatgaggacggcacccccaccgacaagttcttc
gactacgagatcaccgagatctgcggcaagaagctcctgggtaagatcgtggaccgcacc
atcaagcagtacggcttcaccgtagccgccgaggtgctggataatatcaaggccaccggc
tataagtattctacccgcgcctccatcaccatctccatcgccgacatgaccgtgcctgag
aagaagtaccagctcattgccgagaccgagcagcgggtggtggacatcgaggaccagtac
aacatgggcttcatcaccgatgaagagcgctataagctggtggtccgcgagtgggaaaag
accaccgccgatgttaccgatgccctcaccgccagcctggataagtataaccccatcttt
atgatggccgactccggcgcccgcggcagcatgaagcagatccgtcagctcaccggtatg
cgcggcctgatggccaacaccgccggtaagaccattgagatccccatcaaggccaacttc
cgggagggtatgtccgtgctggactactttacctcctcccgcggcgctcgtaagggcctg
gccgataccgctctgcgtaccgccgactccggctacctgacccgccgcatggtggatgtg
tgccaggatgtcatcatccgcgaggatgactgcggcgtggataagggcatcgttgtctcc
gagatcgaggaaaacggtcaggtcattgagaagttctccgagcgtctgaagggccgcttc
cccgtccgggatatcctgaagcccggcaccgatgaggtgctgatctccaaggatcacatg
atgaccgaggacgatgccgccctgctggagaagttcgatattcactccgccgagatccgc
accgtgctgacctgcaaggcccacagcggtatctgcgccaagtgctacggcatgaacctg
gccacctccaagcccgttgcccccggcgaagccgtgggtatcatcgcggcccagtccatc
ggtgagcccggtactcagctgaccatgcgtaccttccacaccggcggcgtggccggcggc
gacatcacccagggtcttccccgagtggaggagctgtttgaggcccgtaagcccaagaag
atggcgaccctgtctgaaatcgccggtaaggtccgctttgaggatgccgccaagggcagc
ctcctgaacatcattgtcaccgccgatgacggggatacccgcacctattccatgccccac
acgggcttgcaggtacgggatggcgatgttatcgaaaagggcaagcagctccaggacggc
gctctgaacccccacgatgtgctgcgtatccgcggtgcgtctgccgtgcataactacctc
atccaggaggttctgaaggtgtaccgtcagcagggcgtggacatcaatgataagcacatt
gaggtcatcgtccgtcagatgatgcgcaaggtccgggtggaggaggccggtgatacgaac
ctgctctccggcgccatggccgatgtcctggaggtggagctcgagaacgccaagcttcgc
gaccgcatcgccgccggcgaggtgaacgccgaaaccggcgagcccctgaaggaagccacc
tatacccagctccttatgggtatcaccaaggcctccctggccacggattccttcctctcc
gccgcctccttccaggagaccaccaaggtcctcaccgaggccgccatcaagggtaaggta
gaccacctggtgggtctgaaggaaaatgtcatcatcggcaagctgattcccgccggcgca
ggtctgggtgcctaccgccactttgccgaggagctggtccccgaaaaggaagagcctgcc
cacgaggtgcagatcatctccaacgctgtggctgccgcccatacggaggactga
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