Vescimonas fastidiosa: MM35RIKEN_21710
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Entry
MM35RIKEN_21710 CDS
T07633
Symbol
topA
Name
(GenBank) DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
vfa
Vescimonas fastidiosa
Brite
KEGG Orthology (KO) [BR:
vfa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vfa03032
]
MM35RIKEN_21710 (topA)
03400 DNA repair and recombination proteins [BR:
vfa03400
]
MM35RIKEN_21710 (topA)
Enzymes [BR:
vfa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
MM35RIKEN_21710 (topA)
DNA replication proteins [BR:
vfa03032
]
Prokaryotic type
DNA Topoisomerases
MM35RIKEN_21710 (topA)
DNA repair and recombination proteins [BR:
vfa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
MM35RIKEN_21710 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim
Zn_ribbon_Top1
DUF1272
Zn_ribbon_recom
Motif
Other DBs
NCBI-ProteinID:
BCK79979
UniProt:
A0A810PUJ1
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Position
pMM35_01:728378..730672
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AA seq
764 aa
AA seq
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MAKKAAKNLVIVESPAKAKTIGKYLGPDYEVMASMGHLRDLPKSKIGIDFENDFKPDYRA
IRGKEDIIKSLKKAADKADMVYLATDPDREGEAISWHLKYLLDLDDAKTRRVTFNEITKK
VVQESIAAPRRIDQDLVDAQQARRVLDRIVGYRLSPLLWKKIRRGLSAGRVQSVAMRLVA
QREKEIETFVPQEYWTLDALLHKQGDKTLFKAHYYGKNGKKYEPASQAETQAICEDVMSR
TFSVKSVKRADKQRSPSPPFTTSTLQQEASRKLNMTPRRTMAIAQQLYEGVELSGEGAVG
LITYMRTDSLRISHEAQVAARALIDSRYGAAYRPNAFRQYKAKAGAQDAHEAIRPSNVSL
TPEQVKGDLSGEQYRLYKLIWSRFLASQMSNAVYDSVTAELQAGDHSFRASASSLKFAGY
AAVYEESRDEEKEEKEPALPPLEEGETVQLQKMEPLQHFTQPPAHFTDASLIRALEENGI
GRPSTYAPTVSTILDREYVVKEGKYLRMTPLGSVVNDLMCQRFPKIVDVKFTANMEKELD
EVESGDKNWKELLREFYGDFEENLSQVEKDMEGVYLKVPDEVSEEKCDVCGRNMVVKSGR
FGRFLACPGYPECTFTKPLVVQMPGRCPKCGGRLMKRTGVSQKSGKQYTYYCCDRSTAAD
ESQRCDFRTWDVPTKDDCPLCGWTMFKKSGKGFNRPFCINPDCPNFLPEDKRGYRKKTED
GGEAAGAKTAAKAAKKTTKKVTKAAPKGAQKSPKVTAKKGEEKE
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaaaaggctgcaaaaaatctggtcattgtggagtccccggccaaggccaagacc
attggcaagtacctgggcccggactacgaggtcatggccagcatgggccacctgcgcgat
ctgcccaagagcaagatcggcattgattttgaaaacgattttaagcccgactaccgggcc
atccggggcaaggaggacatcatcaagagcctgaaaaaggcggcggataaggccgacatg
gtctatcttgccaccgacccggaccgtgagggagaggccatcagctggcatctgaaatac
ctgctggatctggacgatgccaagacccgccgtgtcaccttcaacgagatcacaaaaaaa
gtggtgcaggagagcatcgccgccccccggcgcatcgaccaggacctggtggacgcccag
caggcccggcgcgttttagaccgtatcgtgggctaccgcctgtccccgctgctgtggaag
aagatccgccggggcttgtctgccggccgggtccagtccgtggccatgcgtttggtggcc
cagcgggagaaggaaattgagaccttcgtgccccaggagtattggaccttggatgccctg
ctccataagcagggggataagaccctttttaaggcccattactacgggaaaaacggcaaa
aagtacgagcccgcctcccaggcggagacccaggccatctgtgaggatgttatgtcccgg
accttctccgtcaagagcgtgaagcgggcggataagcagcgctctccgtcccctcccttc
accacctccaccctccagcaggaggcctcccgcaagctgaatatgaccccccgccgcacc
atggccatcgcccagcagctgtatgagggcgtggagctcagcggcgagggcgccgtaggt
cttattacctatatgcgtaccgattctctgcgcatctcccatgaggcccaggtggccgcc
cgtgcgctcatcgacagccgctacggcgccgcctaccgtcccaacgccttccgccagtat
aaggccaaggccggggcccaggacgcccatgaggccattcgccccagcaatgtcagcctc
acccccgagcaggtaaagggcgacctcagcggcgagcagtaccggctctataagctcatt
tggagccgctttttggccagccagatgtccaacgccgtctatgacagcgtcaccgccgag
cttcaggcgggggaccacagcttccgtgccagcgccagcagcctgaaatttgccggctat
gccgccgtgtacgaggagagccgggacgaggagaaggaggagaaggagcccgctctgccg
cctctggaggagggggagacggtgcagctgcagaagatggagcccctgcagcatttcacc
cagccccccgcccactttaccgacgcctccctcattcgcgccctggaggaaaacggcatt
ggccgcccctccacctacgctcccacggtgtctaccatcctggaccgggagtatgtggtc
aaggagggcaagtatctgcgcatgactcccctggggtccgtggtcaacgacttgatgtgc
cagcgcttccccaagatcgtggatgtgaagtttaccgccaatatggaaaaggagctggac
gaggtggagtccggcgataagaactggaaggagctgctgcgggagttctacggcgacttc
gaggagaatctctcccaggtggaaaaggacatggagggcgtgtatctcaaggtgcccgat
gaggtcagcgaggagaagtgcgatgtctgcggccgcaacatggtggtcaagagcggccgc
ttcggccggttcctggcctgccccggctacccggagtgtacctttacaaagcccctggtg
gtccagatgccgggccgctgccccaagtgcggcgggcggcttatgaagcgcaccggcgtc
agccaaaagagcggcaagcagtacacctactactgctgcgaccgctctaccgccgccgac
gaaagtcagcgctgtgacttccgcacctgggatgtacccaccaaggatgactgccccctg
tgcggttggaccatgttcaaaaaatccggcaagggcttcaaccgtcccttctgcatcaac
cccgactgtcccaacttccttcccgaggataaacggggctatcggaaaaagaccgaggac
ggcggtgaagcagccggtgcaaaaaccgccgcaaaagccgccaaaaagaccaccaaaaag
gtgaccaaggctgcaccgaagggtgcccaaaagtcaccgaaagtcaccgccaaaaagggc
gaggaaaaggagtga
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