Vitreoscilla filiformis: VITFI_CDS0464
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Entry
VITFI_CDS0464 CDS
T04960
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
vff
Vitreoscilla filiformis
Pathway
vff03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vff00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VITFI_CDS0464
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vff03019
]
VITFI_CDS0464
03009 Ribosome biogenesis [BR:
vff03009
]
VITFI_CDS0464
Enzymes [BR:
vff01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
VITFI_CDS0464
Messenger RNA biogenesis [BR:
vff03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
VITFI_CDS0464
Ribosome biogenesis [BR:
vff03009
]
Prokaryotic type
rRNA processing factors
VITFI_CDS0464
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
CHP02642
Motif
Other DBs
NCBI-ProteinID:
ASM76243
UniProt:
A0A221KBR0
LinkDB
All DBs
Position
complement(498570..501629)
Genome browser
AA seq
1019 aa
AA seq
DB search
MKRMLINATQPEERRLAIVDGQKLLDFETEIEGREQRKGNIYKAVVTRVEPSLEACFVDY
GEDRHGFLPFKEISKQYFKEGVSVREARIQDVISHGQELLVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGEQREELKENLDQLEYPKGMSLIARTAGIGRTAAELQ
WDLNYLLKLWDAIDGASKAGKGAFLIYQESSLVIRAIRDYFTADIGEILIDTDDIYDQAQ
QFMNHVMPDSANRVKRYRDAAPLFSRFQIEHQIETAFSRTVNLPSGGAIVIDHTEALVAV
DVNSARATRGGDIEETALRTNLEAADEIARQCRLRDLGGLIVVDFIDMEESKNRREVEQR
LKDALRYDRARVQFSSISKFGLLELSRQRLRPALSEGSHITCPRCNGTGHIRDTESSALQ
ILRIIQEEALKENTAAVHVQVPVEVTSFLLNEKRTEITKIELKQRTTVLLVPNKHLETPN
YKLERLRHDDPRLENLQASYTMIEEPEEEVSISRREKSKPKQEPIIKGVLPDQPAPVVPP
PPPPAPAPVPVAPPPAPTPAPAAEPPASGGGLLGWLKRLFGLTPPPAPVAAPVAPAAGVA
PAPAPVAPAPEAPRSGERSNRYNGNRRNERGERSGERTNGERTERAPREGRDTRSNVPAG
TPANAAGTAPTRSERNDRNERREGREGRDNGSRRDGRDNRRERFEEPQDAALTAPLVDAS
DKTIERQERQERQERRLRQQERDMAALTPETPAVVAAESSDAAPGAALNGPITDAVDGAD
SGEGRRRRRRRSGRRDEAGAEGQEGADALNPAEGTEPAVADAAPIATPVETPAVETSATE
SNAPAGEDGEAAESREGGRRRRRPRRGERRDEETGEGVAETAASEDRSDGVVEATVAATE
PVAAPVAPVEVPVDAVVTATPDVAPAPVAAAPAEPAGPYVLPVVELTQLAEAVGLVWVNS
DADKIRAAQEAIAAEPPPVRVPRERKPVVIIDEGPLVLVETRKDLSQVALPFDPPASAG
NT seq
3060 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgctgatcaacgcgacgcagcccgaagaacggcgcctcgccatcgttgac
ggacaaaagctgctcgatttcgaaaccgaaatcgagggccgcgaacaacgcaaaggcaac
atctacaaggccgttgtcacccgggtggaaccgtcgctggaggcgtgtttcgtcgattac
ggcgaggatcgccacggcttcctgccgttcaaagaaatctccaagcagtatttcaaggaa
ggcgtctcggtgcgcgaggcgcgcatccaagacgtgatctcccacggccaagagctgttg
gtgcaggtcgaaaaagaagagcgcggcaacaagggtgcggcgctgaccaccttcatcagc
ttggctggacgctatctggtgttgatgcccaacaacccgcgtggcggtggcgtcagccgc
cgcatcgagggcgagcagcgcgaagagctgaaggaaaacctcgatcagctcgaatacccc
aagggcatgagtttgattgcccgcaccgccggcattggccgcaccgctgccgagctgcaa
tgggacttgaactacctgctcaagctctgggacgccatcgacggcgccagcaaagcgggc
aagggcgcgttcctgatttaccaagaatcgtcgctggtgatccgtgcgattcgggactat
ttcaccgccgacatcggcgaaatcctgatcgacacggacgacatctacgatcaggcccaa
caattcatgaatcacgtgatgccggattcggccaatcgcgtgaagcgctaccgcgacgcg
gccccgctgttcagccggttccagattgagcaccagatcgaaaccgcgttcagccgcacg
gtgaatttgccttcgggtggcgccatcgtcatcgaccacaccgaagcgctggtggcggtg
gatgtgaactcggcccgcgccacgcgtggcggggacatcgaagaaaccgcgttgcgcacc
aacctcgaagccgccgacgaaatcgcccgccagtgccgtttgcgcgacctgggcggcctg
atcgtggtggacttcatcgacatggaagagtcgaagaaccgccgcgaagtcgaacagcgc
ctgaaggacgcactgcgctacgaccgcgcacgcgtgcagttcagcagcatcagcaaattc
ggcttgctggagttgagccgccagcgcctgcgcccggccttgagcgaaggcagccacatc
acctgcccgcgctgcaacggcaccggccacatccgcgacacagaatcgtcggcgctgcaa
atcctgcgcatcatccaagaagaagcgctgaaggaaaacaccgccgctgtgcatgtgcaa
gtgccggtggaagtgacctcgttcttgctgaacgagaagcgcaccgaaatcaccaagatc
gagctgaagcagcgcaccaccgtgctgctggtgccgaacaagcacctggagacgcccaac
tacaagctggagcgcctgcgccacgacgatccgcgcttggaaaacctgcaagccagctac
accatgatcgaggagcctgaagaggaagtctcgatctcgcggcgcgaaaagagcaagccc
aagcaagagccaatcatcaagggcgtgttgccggatcagcccgcacccgtggtgccgccg
ccgcccccgccagctcccgcaccggtgccggtggccccgccgcctgcgcccacgccggcc
ccggcggctgagcccccggcttcgggtggtggtttgctgggttggctcaagcgcttgttt
ggtttgacgccgccgcccgcacctgtcgcagcgccggtggcaccggcggctggggttgcc
cctgcgcccgcacccgtggcccctgcgcctgaagcgccgcgttcgggtgagcgttccaac
cgctacaacggcaaccgtcgcaacgagcgcggtgagcgctcgggtgagcgcaccaacggt
gaacgcaccgaacgtgccccgcgtgaagggcgggacacccgttcgaacgtgcctgccggc
accccggccaacgctgcgggcacggcgccgacacgcagcgagcggaacgatcggaacgag
cgccgcgaagggcgtgaaggccgtgacaacggcagccgccgcgatggccgcgacaaccgc
cgcgaacgcttcgaggagccgcaagacgccgcgctgaccgcgccgttggtggacgccagc
gacaagacgatcgagcgccaagaacgccaggagcggcaggaacgccgtctgcgccagcaa
gagcgtgacatggccgcgttgacgcccgagaccccggcggtcgtggcggcggaaagcagc
gatgccgcaccgggtgccgcgctcaatgggccgatcaccgatgcggtggacggggcggac
agcggtgaaggccgtcgtcgtcgccgtcgtcgcagcggtcgccgtgatgaggcgggagcc
gagggccaggaaggcgccgacgcgctgaatccagcagagggcaccgagcctgccgtcgcc
gatgcggcaccgatcgctaccccggtggaaacgccggcggttgaaaccagcgccaccgag
tccaacgccccagccggtgaggacggcgaagctgcggaatcccgcgaaggcggtcgccgc
cgtcgtcgtccgcgccgtggtgagcgtcgtgacgaggaaacgggggaaggcgtggccgaa
accgctgcgtccgaagaccgttccgacggggtggtcgaagctaccgttgcggccaccgag
cccgtcgcggcaccggtggccccggttgaggtgccggtggacgcggtggtcacggccacg
ccggacgtggcgcccgcgcccgttgcagcagccccagccgagcccgcaggcccctacgtg
ctgccggtggtcgagctcacccagttggccgaagccgttggcttggtgtgggtgaactcg
gatgcggacaagatccgcgccgcccaagaagccattgccgccgagcctccgcccgtgcga
gtgccgcgtgagcgcaagcccgtggtgatcatcgacgaaggcccgctggtgctggtcgaa
acgcgcaaggatctgagccaagtcgccttgccgttcgacccgccggcttcagccgggtaa
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