Vitreoscilla filiformis: VITFI_CDS0795
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Entry
VITFI_CDS0795 CDS
T04960
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
vff
Vitreoscilla filiformis
Pathway
vff03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vff00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
VITFI_CDS0795
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vff03021
]
VITFI_CDS0795
03400 DNA repair and recombination proteins [BR:
vff03400
]
VITFI_CDS0795
Enzymes [BR:
vff01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
VITFI_CDS0795
Transcription machinery [BR:
vff03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
VITFI_CDS0795
DNA repair and recombination proteins [BR:
vff03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
VITFI_CDS0795
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
ASM76573
UniProt:
A0A221KCP0
LinkDB
All DBs
Position
847475..851596
Genome browser
AA seq
1373 aa
AA seq
DB search
MAQATPYSYTERKRIRKSFGKRESVLNVPYLLTMQRDSYVAFLQKEVPPTQRKPEGLQAA
FLSAFPIVSHNGFVEMKFLEYNIARPTFDVRECQQRGLTFASAVRAKLQMIIYDREAHPA
KVVKEIKEQEVYMGEVPLMTDYGSFIVNGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLL
FSARIIPYRGSWLDFEFDPKDILYFRVDRRRKMPVTILLKAIGLNPEQILAHFFKNDSIR
LMDTGAQMELVPERLKGEVARFDITDKSGAVIVEKDKRITARHVRQLDQSGTHFVTVPEE
FLVGRVLARNQIDPDTGEIIAKANDELTESLLKKLRSAGIRDIQCIFTNELDQGAYISQT
LAQDETADQFAARVAIYRMMRPGEPPTEDAVEALFQRLFYSADTYDLSRVGRMKFNARVG
RNVPEGAMTLSNEDILDVVKILVDLRNGRGEVDDIDHLGNRRVRCVGELAENQYRSGLAR
IEKAVKERLGQAETESLMPHDLINSKPISAALKEFFGASQLSQFMDQTNPLSEITHKRRV
SALGPGGLTRERAGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLALYARLNEYGFLETP
YRRVVDGQVTDQIDYLSAIEEGKYVIAQANATLDAQGRLSDELVSAREKGESMFVSPERV
QYMDVAPTQIVSVAASLVPFLEHDDANRALMGANMQRQAVPTLRPEKAMVGTGVERVAAV
DSGTVVVARRGGVVDYVDTNRVVIRVNDAETAAGEVGVDIYNLIKYQRSNQNTNIHQRPI
VKRGDRVASGDVVADGASTDLGELALGQNMLVAFMPWNGYNFEDSILISERVVAEDRYTS
IHIEELVVMARDTKLGSEEITRDIPNLSEQQLARLDESGIVYIGAEVSPGDVLVGKVTPK
GETTLTPEEKLLRAIFGEKASDVKDTSLRVDQGTSGTVIDVQVFTREGIQRDKRAQQIID
DELKRYRLDLNDQLRIVEIDAFDRIEKLLVGRVANGGPHKLTKGTVISKDYLAGVDKYHW
FDVRPAEDEVANQLESIKNSLEQTRHGFDLAFEEKRKKLTQGDELPAGVLKMVKVYLAVK
RRLQPGDKMAGRHGNKGVVSKIVPVEDLPYMADGTPADIVLNPLGVPSRMNVGQVLEVHL
GWAGKGLGQRIDEMLRQQTAVVELRKFLDELYNQSGGKTERLEELSDDEVIAMCRELTKG
VPFATPVFDGAKEEEIRAMLKLAYPDDIAKRKGLTESRTQAYLHDGRTGERFERPTTVGY
MHVLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYVLQE
MLTVKSDDVNGRTKVYENIVKGEHAIDAGMPESFNVLVKEIRSLGIDIELERN
NT seq
4122 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaagcaaccccctacagctacaccgagcgcaagcgcatccgcaagagcttcggc
aagcgtgagagcgttctcaacgtcccttatctgctgaccatgcagcgcgattcttatgtc
gcgttcctgcaaaaagaggtgccgccgacccagcgcaagcccgaaggtctgcaagcggcg
ttcttgtctgcgttcccgattgtttcgcacaacgggttcgtggaaatgaagtttctcgaa
tacaacatcgcccgtccgacgttcgatgtgcgcgagtgccaacagcgtggcctgaccttt
gcctcggccgtgcgtgccaagctgcaaatgatcatctatgaccgtgaggcgcatcccgcc
aaggtggtcaaggagatcaaggagcaagaggtctacatgggcgaagtgcccctgatgacc
gactacggctccttcatcgtcaacggcaccgagcgcgtgatcgtgtcgcagttgcaccgc
tcgccgggcgtgttcttcgagcacgacaagggcaagacccacagctcgggcaagctgctg
ttctcggcccggatcatcccctaccgtggctcgtggctggacttcgagttcgacccgaag
gacatcctctacttccgcgtcgaccgtcgtcgcaagatgccggtgacgattctgctcaag
gccatcggcctgaaccctgagcaaatcctggcgcacttcttcaagaacgacagcatccgc
ctgatggacaccggcgctcaaatggagctggtgcccgagcgcctgaagggcgaggtggcg
cgctttgacatcaccgacaagtcgggtgccgtcatcgtcgagaaggacaagcgcatcacg
gcgcgccatgtgcgccagctcgaccagtcgggcacgcacttcgtcaccgtgccggaagag
ttcctggtgggccgcgtgttggcgcgcaaccagatcgacccggacaccggcgaaatcatc
gccaaggccaacgatgaactgaccgaatcgctgctgaagaagctgcgctcggctggtatc
cgcgacatccagtgcatcttcaccaacgagctggatcaaggcgcctacatcagccagacc
ctggcccaagatgaaaccgccgaccagttcgctgcccgcgtggccatctaccgcatgatg
cgccccggcgagccgccgaccgaagacgccgtcgaagccctgttccagcgcctgttctac
agcgccgacacctacgatctgtcgcgcgtgggccggatgaagttcaacgcccgcgtgggc
cgcaacgtgccggaaggcgcgatgacgctgtcgaacgaggacatcctcgacgtggtcaag
atcctggtggatctgcgcaacggtcgcggcgaagtcgatgacatcgaccacttgggcaac
cgccgcgtgcgctgcgtgggtgaactggccgaaaaccaataccgctcgggcctggcccgc
atcgaaaaggcggtgaaggagcgtctgggccaggctgaaaccgaaagcctgatgccgcac
gacctgatcaactccaagccgatctctgcggcactgaaggagttcttcggggcgtcgcag
ttgtcgcagttcatggatcagaccaacccgctgtcggaaatcacgcacaagcgtcgcgtg
tccgccctgggcccgggcggtctgacccgcgaacgcgccggcttcgaagtgcgtgacgtt
cacgtcacccactatggccgcgtctgcccgattgaaacgccggaaggcccgaacatcggc
ctgatcaactcgctggctctgtatgctcgcctgaacgagtacggcttcctggaaacgccg
taccgccgcgtggtggacggccaagtgaccgaccagatcgactacctgtcggccattgag
gaaggcaagtacgtcatcgcccaggccaacgccacgctggacgcccaaggccgtctctcg
gacgagctggtgagcgcgcgtgaaaagggcgaatcgatgttcgtcagcccggagcgcgtg
cagtacatggacgtggcgccgacgcagatcgtgtcggtggcggcctcgctggtgccgttc
ctcgaacacgatgatgcgaaccgcgcattgatgggcgccaacatgcagcgccaggccgtg
ccgacgctgcgcccggaaaaagccatggtcgggacgggcgttgagcgcgttgcggcggtg
gactcgggtaccgtggtggtggcccgtcgcgggggcgtggtggactacgtcgataccaac
cgcgtggtgattcgcgtcaacgacgcggaaaccgctgccggtgaagtcggtgtggacatc
tacaacctgatcaagtatcagcgttccaaccagaacaccaacatccaccaacgcccgatc
gtcaagcgcggggaccgtgtggcttcgggtgacgtggtggccgacggcgcttcgaccgac
ctgggcgaactggccctcggccagaacatgctggtggccttcatgccctggaacggctac
aacttcgaagattcgatcctgatctcggagcgcgtggtggccgaagaccgctacacctcg
attcacatcgaggaactggtggtcatggcgcgtgacaccaagctgggctcggaagaaatc
acccgcgacattccgaacctgagcgaacagcaactggcgcgtctggacgagtcgggcatc
gtgtacatcggtgcggaagtcagcccgggtgacgtgctggtcggtaaggtgacgccgaag
ggcgaaaccacgctgacgccggaagaaaagctgctgcgcgccatcttcggtgagaaggcg
tccgacgtgaaggacacctcgctgcgcgtcgatcaaggcaccagcggcaccgtcattgac
gtgcaagtcttcacccgtgaaggcatccagcgtgacaagcgcgcccagcagatcatcgac
gacgagctgaagcgctaccgcctggatttgaacgaccagttgcgcattgtggaaatcgat
gcgttcgaccggatcgagaagctgctggtgggccgcgtggccaacggcggcccgcacaag
ctgaccaagggcacggtcatcagcaaggactacctggccggtgtggacaagtaccactgg
ttcgatgtgcgtccggctgaagacgaggtggccaaccagctcgaatccatcaagaactcg
ctggagcaaacccgccacggcttcgacctcgcttttgaagaaaagcgcaagaagctgact
caaggcgacgaactgcccgctggcgtgctgaagatggtgaaggtctacctggccgtcaag
cgccgcctgcaaccgggcgacaagatggccggtcgtcacggcaacaagggtgtggtgtcg
aagatcgtgccggtggaagatctgccgtacatggccgacggtaccccggctgacatcgtg
ctcaacccgctgggcgtgccttcgcggatgaacgtgggtcaggtgctggaggtgcatttg
ggttgggctggcaagggcctgggccagcgcatcgatgagatgctgcgccagcaaaccgcc
gtggtcgagctgcgcaagttcttggacgagctgtacaaccagtcgggcggcaagaccgaa
cgcctggaagaactctcggacgacgaagtcatcgccatgtgccgcgagctgaccaagggc
gtgccgttcgccaccccggtgtttgacggcgccaaggaagaagaaatccgcgccatgctc
aagctggcgtatccggacgacatcgccaagcgcaagggcctgaccgagtcgcgcacccag
gcttacctgcatgacggtcgcaccggcgagcgcttcgagcgtccgaccaccgtcggctac
atgcacgtgctcaagctgcaccacttggtggacgacaagatgcacgcccgctccaccggc
ccgtactcgctggtgacgcagcaaccgttgggcggtaaggcccagttcggtggccagcgc
ttcggtgaaatggaagtgtgggcgttggaagcgtacggcgcggcctacgtgctgcaagaa
atgctgaccgtgaagtccgatgacgtgaacggtcgcaccaaggtgtacgaaaacatcgtc
aagggcgagcacgccatcgacgccggcatgccggagtcgttcaacgtgctggtgaaggaa
atccgttcgctcggtatcgacatcgagctggaacgcaactaa
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