Vitreoscilla filiformis: VITFI_CDS0796
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Entry
VITFI_CDS0796 CDS
T04960
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
vff
Vitreoscilla filiformis
Pathway
vff03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vff00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
VITFI_CDS0796
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vff03021
]
VITFI_CDS0796
03400 DNA repair and recombination proteins [BR:
vff03400
]
VITFI_CDS0796
Enzymes [BR:
vff01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
VITFI_CDS0796
Transcription machinery [BR:
vff03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
VITFI_CDS0796
DNA repair and recombination proteins [BR:
vff03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
VITFI_CDS0796
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
ASM76574
UniProt:
A0A221KC10
LinkDB
All DBs
Position
851617..855828
Genome browser
AA seq
1403 aa
AA seq
DB search
MKGLLDLFKQFTPDEHFDAIKIGLASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIDLAAPCAHIWFLKSL
PSRLGLVLDMTLRDIERVLYFEAYVVVDPGMTPLKKFGIMTEDDYEQKRVEFGDEFVALM
GAEGIQKLLADMDLDVEIDRLRNDMTGSELKVKKNSKRLKVMEAFKKSGIKPNWMVMDVL
PVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLARLLELKAPEIIVRNEKRMLQEA
VDSLLDNGRRGKAMTGANKRALKSLADMIKGKSGRFRQNLLGKRVDYSGRSVITVGPTLK
LHQCGLPKLMALELFKPFIFSRLEAMGIATTIKAAKKEVESGTPVVWDILEEVIKEHPIM
LNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSIEAQMEARA
LMLASNNVLFPASGEPSIVPSQDVVLGLYYATRERTNGKGEGMIFSDTVELQRALDNGAV
ELTAKISVRLPEWNKDERGQFHATMKLVDTTVGRALLSEILPKGLPFSNINKALKKKEIS
RLINASFRKCGLKETVVFADKLLQSGFRLATRAGISIAIDDMLVPPKKYELIAKAEAEVK
EIEQQYTSGLVTAGERYNKVVDIWGKTGDEVGKVMMSQLSKQKVIDRHGKEVDQESFNSI
YMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKG
LADTALKTANSGYLTRRLVDVTQDLVVVEDDCGTEHGFAMRALVEGGEVIESLRDRILGR
VAAVEIVSPETQEVVFPAGTMLDEDKLDVLEAAGVDEVKVRTPLTCETRYGLCAKCYGRD
LGRGGQVNTGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVDAKSDGFISFNS
TMRYVTSGKSELVVISRSGEIIISDQHGRERERHKVPYGAILSIKADQQIKAGTVLANWD
PLTRPIITEFAGLAKFENVEEGVTVAKQVDEVTGLSTLVVIDPKRRGAAKIVRPQVKLLD
ANGQEIKIPGTDHSVTIGFQVGALIQVRDGQNLLPGEVLARIPVEGQKTRDITGGLPRVA
ELFEARSPKDKGVLAEQTGTVSFGKETKGKVRLQITDPDGKVWEELVPKEKNILVHEGQV
VNRGELIVDGAADPQDILRLLGIEELARYIVDEVQDVYRLQGVKINDKHIEVIVRQMLRR
VQIVNPGESTYIAGEQVERSELLNTNERLRKEGKVPATYADVLLGITKASLSTDSFISAA
SFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGMAFHQARKAKEEMDDTERRRI
ALEEAQELASAQLASLEADSTGS
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
atgaaaggtttgctggacctgttcaagcagttcaccccggatgaacacttcgacgcgatc
aaaatcgggctggcttcgcccgagaagatccgctcgtggtcgttcggcgaggtgaaaaag
cccgagacgatcaactaccgcaccttcaagcccgaacgtgacggcttgttctgcgccaag
atcttcggcccgatcaaggactatgagtgcctgtgcggcaagtacaagcgcctgaagcac
cgtggcgtgatctgcgaaaagtgcggcgtggaagtgacgcagaccaaggtgcgtcgcgac
cgcatgggtcacatcgacctggcggctccgtgcgcgcacatttggttcttgaagtcgctg
ccgtcgcgtctgggcctggtgctggacatgacgctgcgcgacatcgagcgcgtgctgtac
tttgaagcttatgtggtcgttgatcccggcatgaccccgctgaagaaattcggcatcatg
accgaggacgattacgagcaaaagcgggtcgaattcggcgacgaattcgtcgcgctgatg
ggcgccgaaggcatccagaagctgctggcggacatggatctcgacgttgagatcgaccgc
ctgcgcaacgacatgaccggctccgagctgaaggtcaagaagaattccaagcgcctgaag
gtgatggaagccttcaagaagtccggcatcaagccgaactggatggtgatggacgtgctg
ccggtgctgccgccggatctgcgtccgctcgttccgctggacggtggccgcttcgccacg
tcggacttgaacgacttgtatcgccgtgtcatcaaccgcaacaaccgcttggcgcgtctg
ttggagttgaaggcgcccgagatcatcgtgcgcaacgaaaagcgcatgttgcaagaggcg
gtcgattcgctgctggacaacggtcgccgtggcaaggccatgacgggcgccaacaagcgg
gctctgaagtcgctggccgacatgatcaagggcaagagcggtcgcttccgtcagaacttg
ctgggcaagcgcgtggactactcgggtcgttcggtgatcaccgtcggcccgaccctcaag
ctgcaccagtgcggtctgcccaagctgatggcgctggagttgttcaagcccttcatcttc
tcgcgtctggaggcgatgggcatcgccaccaccatcaaggcggcgaagaaggaagtggaa
tcgggcacgccggtggtgtgggacatccttgaagaagtcatcaaggaacacccgatcatg
ctgaaccgggcgccgacgctgcaccgcctgggcatccaggcgttcgagccggtgctgatc
gaaggcaaggccatccaactgcacccgctcgtttgctcggccttcaacgccgacttcgac
ggtgaccagatggccgttcacgtgccgctgtccatcgaagcgcagatggaagcccgtgcg
ctgatgctggcctccaacaacgtgctgttcccggcttcgggtgagccgtcgatcgtgccg
tcgcaagacgtggtgctgggcctgtactacgccacccgcgagcgcaccaacggcaagggc
gaaggcatgatcttctccgacaccgtcgagctgcaacgtgcgctcgataacggtgccgtc
gagctgaccgccaagatcagcgtgcgcctgcccgagtggaacaaggacgaacgcggccaa
ttccacgccaccatgaagctggtggacacgaccgtgggccgggcgctgttgagcgaaatt
ctgcccaagggtttgccgttctccaacatcaacaaggcgctgaagaagaaggaaatctcg
cgtttgatcaacgcgtccttccgcaagtgcggcctgaaggaaaccgtggtgttcgccgac
aagttgctgcaaagcggcttccgtctggccacacgtgcgggcatctcgatcgccattgat
gacatgctggtgccgcccaagaagtacgagctgatcgccaaggccgaagccgaggtgaag
gaaatcgaacagcagtacacctcgggcttggtgacggcgggtgagcgctacaacaaggtg
gtggacatctggggcaagaccggcgacgaagtcggcaaggtcatgatgtcgcagctctcc
aagcaaaaggtcatcgaccgccacggcaaggaagtggatcaggagtccttcaactccatc
tacatgatggccgactcgggcgcccggggttctgccgctcagatccgccagctcgccggg
atgcgcggcctgatggccaagccggacggctcgatcattgagacccccatcacggcgaac
ttccgtgaaggcctcaacgtgttgcagtacttcatttccacccacggtgctcgtaagggc
ctggcggatacggcactgaagaccgccaactccggctacctcacccgccgtctggtggac
gtgacgcaagacctggtggtggtggaagacgactgcggcaccgagcacggctttgccatg
cgtgcgctggtcgagggcggtgaagtcatcgaatcgctgcgcgaccgcatcttgggtcgg
gtggcggcggtggaaatcgtcagcccggaaacccaggaagtcgtgtttccggctggcacc
atgctggacgaagacaaactcgacgtgctggaagccgctggcgtggacgaagtcaaggtg
cgcaccccgctcacctgcgaaacccgctacggcctgtgcgccaagtgctatggccgcgat
ctgggccgaggcggccaagtcaacaccggcgaggccgtcggtgtgatcgccgcgcagtcc
atcggtgaaccgggcacgcagttgacgatgcggacgttccacatcggtggtgcggcttcg
cgtgcggcggtggcttccagcgtggatgcgaagtcggatggtttcatcagcttcaacagc
accatgcgttacgtcaccagcggcaagagcgagctggtggtgatctcgcgttcgggcgaa
atcatcatctccgaccagcatggccgcgagcgtgagcgtcacaaggtgccgtacggcgcg
atcctgagcatcaaggccgaccagcagatcaaggctggcaccgtgctggcgaactgggat
ccgctgacccgcccgatcatcacggaattcgctggcttggcgaagttcgagaacgtcgag
gaaggtgtgaccgtggccaagcaggtggacgaagtcaccggcttgtccaccctggtggtg
atcgatccgaagcgccgtggcgcggccaagatcgtgcgcccgcaggtcaagctgctggac
gccaacggtcaggaaatcaagattccgggcacggatcactcggtgaccatcggcttccaa
gtcggggcgctgatccaggtgcgcgacggccaaaacctgctgccgggtgaagtgctggca
cggattccggtcgaaggccagaaaacccgtgacattaccggcggtctgccgcgtgtggcc
gagctgttcgaagcccgttcgcccaaggacaagggtgtgctggccgagcagaccggcacg
gtgtccttcggcaaggaaaccaagggcaaggtgcgcttgcagatcaccgacccggacggc
aaggtctgggaagagctggtgcccaaggaaaagaacatcttggttcacgaaggccaggtg
gtcaaccgtggcgaactgatcgtcgacggcgccgccgatccgcaggacatcctgcgtctg
ctgggcatcgaagagctggcacgttacatcgtcgacgaagtgcaggacgtgtatcgcttg
cagggcgtgaagatcaacgacaagcacatcgaggtgatcgttcgccagatgctgcgccgc
gtgcagatcgtcaacccgggcgaatcgacctacatcgctggcgaacaggtggagcgttct
gagctgctcaacaccaacgagcgcctgcgcaaggaaggcaaggtgcctgccacctacgcc
gacgtgctgttggggatcaccaaggcgtcgctgtccaccgactcgttcatctcggcggct
tccttccaggaaaccacccgcgtgctgaccgaagcggccatcatgggcaagcgcgacgag
ctgcgcggcttgaaggaaaacgtcatcgtgggtcgcctgatcccggccggtactggcatg
gctttccaccaagcccgcaaggccaaggaagagatggacgacaccgagcgccgccgcatc
gctttggaagaagcgcaggagttggcttcggcgcagttggccagcttggaggctgattca
acgggatcttga
DBGET
integrated database retrieval system
