Vitreoscilla filiformis: VITFI_CDS1483
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Entry
VITFI_CDS1483 CDS
T04960
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
vff
Vitreoscilla filiformis
Pathway
vff03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vff00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VITFI_CDS1483
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vff03019
]
VITFI_CDS1483
03400 DNA repair and recombination proteins [BR:
vff03400
]
VITFI_CDS1483
Enzymes [BR:
vff01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VITFI_CDS1483
Messenger RNA biogenesis [BR:
vff03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VITFI_CDS1483
DNA repair and recombination proteins [BR:
vff03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
VITFI_CDS1483
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
Helicase_C
RecQ_Zn_bind
SecA_DEAD
ResIII
Motif
Other DBs
NCBI-ProteinID:
ASM77261
UniProt:
A0A221KE24
LinkDB
All DBs
Position
complement(1554949..1556862)
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AA seq
637 aa
AA seq
DB search
MNTGSFSSSSPAPDSAQQVLQEVFGYSAFRGAQQAIVGHVCGGGDALVLMPTGGGKSLCY
QIPAIVRHRAGQGVTVVVSPLIALMHDQVGALDEAGVPAAYLNSSLDLSGVQHVERELMS
GRLVLLYAAPERLTQPRFLELLDRLHERGRLSLFAIDEAHCVSQWGHDFREDYLQLSVLA
ERFAGVPRIALTATADDHTRADIIERLSLASARCFISSFDRPNIRYTLVERDNARAQLLR
FLRDEHEGEAGIVYCQSRKKVEDTAEWLQGEGIAALPYHAGLSTELRRRNQDRFLREDGL
IMVATIAFGMGIDKPDVRFVAHLDLPKNIEGYYQETGRAGRDGEPAEAWLTYGLSDVVNQ
RRMIDESPADDTFKRLQRAKLDALLALAESLDCRRQRLLAYFGEDSAPCGNCDNCLHPPA
RWDATDAARKLLSCIYRCQQHSGFGFGAGHIIDVLRGKLTDKVQQRRHERLSTFGIGHDL
SEAQWRSVLRQLLALGHVQAEGDFNVLSLSDSARAVLRGEVPVVLRQAREAGSRQRTRAA
RTARLGDVSGAPRLPASAATLDAAGQARYAALRAWRGEVAREHNLPAYVVFHDATLAQMA
QSHPKSLAELAHISGVGSKKLAAYGEEILRVLAQSVD
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atgaacaccggctctttttcttcctcgtcccccgcccctgacagcgctcaacaggtgttg
caggaggtgtttggctacagcgcgtttcggggcgcgcaacaggccatcgtcggccacgtc
tgcggcgggggggatgcgttggtgctcatgcccacgggcggcggcaaaagcttgtgttac
caaattcctgccatcgtgaggcaccgggcagggcaaggggtgacggtggtggtcagcccg
ctgattgcgctcatgcacgaccaagtgggcgcgttggacgaagccggcgtgccagcggcc
tacctcaacagctcgctggatttgagcggcgtgcaacacgtcgagcgcgagttgatgagt
gggcgtctggtgttgttgtacgccgcgcccgagcgcctgacccagccgcgtttcttagag
ctgctcgaccgcttgcatgaacgtggacgcttgagcctgtttgccatcgacgaagcacac
tgcgtcagccaatggggccacgatttccgcgaggactacctgcaactgagcgtgctggcc
gagcggtttgccggggtgccgcgcatcgcgctcaccgccacggcggacgaccacactcgg
gcggacatcatcgagcggctgagtttggcgtcggcgcgttgtttcatcagcagttttgac
cggcccaacatccgttacaccctggtcgagcgggacaacgcccgggcccaattgctgcgg
tttttgcgcgatgagcacgagggcgaagcgggcatcgtgtactgccaaagccgcaagaag
gtggaagacacggcggaatggctgcaaggcgaaggcatcgcggcgctgccgtaccacgcg
ggtttgagtaccgagctgcggcgccggaaccaagaccggtttttgcgggaagacgggctg
atcatggtggccacgattgcctttggcatgggcatcgacaagccggatgtgcggtttgtg
gctcacttggatttgcccaagaacatcgagggctactaccaagagacgggccgtgcgggc
cgcgatggggaaccggcggaggcgtggctaacctacggtctgtccgacgtggtgaaccag
cggcgcatgatcgacgagagtccagcggatgacaccttcaagcgcctgcaacgtgccaag
ctggatgcgcttctggcgttggcggaaagtttggattgccggcgccagcgcctgctggct
tattttggtgaagacagcgccccgtgcggcaactgcgacaactgcctgcacccgcccgcc
cgctgggatgcgacggacgcggcgcgcaagctgttgagctgcatttaccgctgccagcag
cattcggggtttgggtttggggcggggcacatcattgatgtgctgcggggcaagctgacg
gacaaggtgcaacagcgccgccatgaacggctgtccacttttggcatcgggcatgatttg
agcgaagcgcaatggcgcagtgtgttgcgccagttgctggcgctgggacatgtgcaggcg
gagggcgatttcaacgtcctgagcctgagcgacagtgcccgggcggtgctgcggggtgag
gtgccggtggtgttgcgccaagcgcgtgaggcgggatcgcgccagcgcacgcgggccgcc
aggacggcgcgtttgggcgacgtgtccggcgccccgcgcttgccggcttcggcggccaca
ttggatgcggcgggccaagcgcggtatgcagcgttgcgggcttggcggggtgaggtggcg
cgggagcacaacctaccggcctacgtggtgttccacgatgccactttggcgcaaatggcc
cagagtcacccgaagagtttggccgaactggcccacatcagcggagtggggtcgaagaag
ttggcggcgtatggggaggagattttgcgggtgctggctcagtcggtggactga
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