KEGG   Vitreoscilla filiformis: VITFI_CDS1999
Entry
VITFI_CDS1999     CDS       T04960                                 
Name
(GenBank) single-stranded DNA exonuclease
  KO
K07462  single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
vff  Vitreoscilla filiformis
Pathway
vff03410  Base excision repair
vff03430  Mismatch repair
vff03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:vff00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    VITFI_CDS1999
   03430 Mismatch repair
    VITFI_CDS1999
   03440 Homologous recombination
    VITFI_CDS1999
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:vff03400]
    VITFI_CDS1999
DNA repair and recombination proteins [BR:vff03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    RecJ
     VITFI_CDS1999
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecFOR pathway proteins
     VITFI_CDS1999
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      VITFI_CDS1999
SSDB
Motif
Pfam: DHH RecJ_OB DHHA1
Other DBs
NCBI-ProteinID: ASM77777
UniProt: A0A221KG03
LinkDB
Position
complement(2076041..2077786)
AA seq 581 aa
MTSPLLQIRDVPPRVAYALEQAGVPPLLARLYAARGVRASGELDTSLAQLLPPDTLHGTT
AAARLLADAIDAAQPMCIVADYDCDGATACAVALRGLAALGAHPVQLRYVVPDRQRDGYG
LTPAIVDQVLERHPDVRLLITVDNGIASQEGVAHAQARGLKVLITDHHLPACPNGEPLLP
QADVIVNPNQPGCTFPSKAMAGVGVMFYVLLALRAELRQRGRFTAANQPRLDALLDLVAL
GTVADVVALDANNRRLVAQGLHRIRQGRMQPGMRALWEVAGRSAARAQAADLGFALGPRL
NAAGRLADMTLGIECLLTDDTARAWALAQQLDAINRERRDVEAGMREQAERLCATLAPID
DVPLALTLFDEDFHEGVVGIVAGRLKDRLHRPVFVFARGLDGLLKGSGRSIPGFHLRDAL
DWMAKQHPGILLRFGGHAMAAGCTLAPETLDTFDQALRAVAQSWLAPSALGKILPTDGSL
PTTLWTLDTARQLAAPPWGQGFEAPLFCDEVDVVSQQRVGERHSRLRIQREGQTHNAIWF
GHTAPLSGRTRLAYRLSADEFQGRERLQLVVEAAVPADQKS
NT seq 1746 nt   +upstreamnt  +downstreamnt
gtgacatctcccctgctccaaatccgcgacgtgccccctcgggtggcctacgcgcttgaa
caagccggcgtgccgcctctgctggctcgcttgtacgccgcacgcggggtgcgcgcatcc
ggcgaactggacacctccctggcccaattgctgccacccgacaccctgcacggcaccacc
gctgcggcccgcttgttggccgatgcgatcgacgctgcccagcccatgtgcatcgtcgcc
gactacgactgcgacggagccaccgcgtgtgccgtggcactgcgcggcttggcggccctg
ggcgcccacccagttcagttgcgctacgtggtgcccgatcgccagcgtgatggctacggc
ctcacgccggccatcgtcgatcaagttttggagcgtcaccccgatgtgcgcctgctgatc
acggtggacaacggcatcgccagccaagaaggcgtcgcccacgcccaggcgcggggtttg
aaggtgttgatcaccgatcaccacttgccagcgtgtccgaacggtgaaccgctgctgccg
caggccgatgtgatcgtcaacccgaaccaacccggctgcaccttccccagcaaagcgatg
gcaggtgtgggggtgatgttttacgtcttgctggcgttgcgcgctgagttgcgccagcgc
ggacgctttaccgccgccaaccaaccacggttggatgccctgctggacttggtggccttg
ggcaccgtcgccgacgtggtggcgctggatgccaacaaccgccggctggtggcccaaggt
ttgcaccgcatccgccaaggtcggatgcaaccggggatgcgggctttgtgggaagttgcg
ggacgttcagccgcccgggcgcaagccgctgacctgggattcgccctcggcccgcgcctg
aatgccgctggccgtttggccgacatgaccttgggcatcgagtgcttgctcaccgacgac
acggcacgcgcctgggccttggcccagcagctcgatgccatcaaccgcgaacgccgcgat
gtggaagccggtatgcgcgaacaagccgaacggctgtgcgccaccctggcccccatcgat
gatgtgccgttggccctgacactgtttgacgaagactttcacgagggcgtggtgggcatc
gtggcagggcggctcaaggatcgtctgcatcggcctgttttcgtgtttgcccggggcctg
gatggcttgctcaaaggctcaggccgctcgattccgggctttcatctgcgggatgcgctg
gactggatggccaaacagcacccgggaatcctgctgcgttttggtggccatgcgatggcc
gcaggttgcaccctcgcacctgaaacgctggacaccttcgaccaagcgctgcgggccgtg
gcacaaagctggctggcccccagtgcgctgggcaaaatcctcccgaccgatggctcgctg
cccaccacgctgtggacgctggacaccgcccgtcaattggccgccccgccctggggccaa
ggttttgaagcgcccctgttttgtgacgaagtggacgtggtgagccaacagcgggtcgga
gagcggcattcccggttgcgcatccagcgcgagggccagactcacaacgccatttggttt
ggacacaccgcccctttgagcggtcgaacccggctggcctaccgcctcagcgccgatgaa
tttcaagggcgcgagcggctgcaactggtggtcgaagcggcggtgccagcggatcaaaaa
tcgtag

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