Vitreoscilla filiformis: VITFI_CDS2153
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Entry
VITFI_CDS2153 CDS
T04960
Name
(GenBank) Exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
vff
Vitreoscilla filiformis
Pathway
vff03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vff00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
VITFI_CDS2153
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vff03400
]
VITFI_CDS2153
Enzymes [BR:
vff01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
VITFI_CDS2153
DNA repair and recombination proteins [BR:
vff03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
VITFI_CDS2153
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_25
Motif
Other DBs
NCBI-ProteinID:
ASM77931
UniProt:
A0A221KFX9
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All DBs
Position
2244038..2247778
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AA seq
1246 aa
AA seq
DB search
MNAPDLIPLRPLSFPLHGARLIEASAGTGKTWTIAALYLRLVLGHGPDGVAFPGGPLRPD
QILVMTFTRAATRELSDRIRDRLLKAAQAFRADDAPSPKEDLVLAELFAAYPPGSARSQA
AHRLALAAEGMDDAAIHTIDAWCQRMLREHAFDSGNLFDEELLPDEQHLLTQAVQDYWRQ
QCYPLTAAQLGPVLGVWANVEALLSDIRNILGLLDPHQTEKRNIIPVSLGACLGECQTQR
QQRLTELKAGWAERAEGLRDWVVFQTEPKVCPWDRRKLSAANVRKWMQTVIDWAQDPDAE
TLALSDAAWHRIRPEGIAEAWKGKGVQPALPEACAAFVTLAADLASLPSLAPALRLHAAQ
HIAQRLEELKRQSGHFGFADLLVRLDTALQSESGERLRQRILTQTPVALIDEFQDTSALQ
YRIFDRLYRVAELDGQGATPTALLLIGDPKQSIYRFRGADIASYLAARRATAGRHYVLDT
NYRSTQAVVQAINHCFAQAEQRPGAGAFGYRAVDDDGVIDNPLPFVTVATQGRAEQFLHA
GAEQPALTLVHALQLAPAETHLRHLAELCAAQIVTWLNEARTGFAVPGDPSTWCRLRPAD
IAVLVRTGREARAIKKALERRRVASVYLSDRESVFNSDEAGDLLHLLRAVAQPLDSRLVR
AALATRTLGLNLAQLAQLAADDEAFDKEAEKLRELHGVWQRQGVLTLLRQVLHRYDLPAR
WLDPQADPGGERRLTNFLHLAELLQSASRELDGEQALIRWLTEQCEAAAAGQVSGDEQVV
RLESDADLVKVVTIHKSKGLEYPVVCLPFAVSFRPEAKGHTTAFAWLDEHGQRQLRLDID
DELIARADAERLREDVRLLYVALTRARHALWLGFAALTVGNSKECQTHRSAAGHLLTHPD
ATDADTLAQMLARLAQGCPDIALQPAPEERPPLVPLTRREQAANLTTAQTYNGQFDRTWG
IASFSSLVRAMTSTHTVIHAPRPADDEPPAAEFPSPSGEGPGVRWHRFERGPLAGNFLHE
QLEWLAHEAFALADDSSLAERLRRRCERAGRGAQADDVIAWLSAWMHQPLTGPGVPLPHL
HRLLPEMEFWLPAAQLPAATVDALCRRHLLRDLAPEAPRPTLVARELHGLVMGFADLVFE
HDGRYWVLDYKSNQLGPEGSSYTAAALTEAMALHRYDVQAALYLLALHRLLRQRLGDVYD
PASQLGGAIYLFLRGLDGPVQGQHLVPPDLALLEALDALLTQEATA
NT seq
3741 nt
NT seq
+upstream
nt +downstream
nt
atgaacgcccccgacttgattccgctgcgcccgctgagttttccgctgcacggggcgcgt
ttgatcgaagccagcgccggcaccggcaaaacgtggacgattgccgcgctttacctgcgc
ttggtgctgggccacggcccggacggcgtcgcgttccccggtggcccgctgcgccccgat
cagattttggtgatgactttcacccgcgccgccacgcgggagctgtctgaccgcatccgc
gaccgtttgttgaaagcggcgcaggcctttcgcgccgacgatgcgccgtcgccgaaagaa
gaccttgtgctggccgagctgttcgccgcgtatccacccggatcggcacgcagccaagcg
gcgcaccgcctcgccctggccgctgaaggcatggacgacgcagcgatccacaccatcgac
gcctggtgccaacgcatgctgcgcgaacacgccttcgacagtgggaacctgttcgacgaa
gaactgttgcccgatgagcagcacctcctcacccaagccgtgcaggattactggcgccaa
cagtgctacccgctgaccgccgcccagctcgggccggtgctgggtgtgtgggccaacgtc
gaggcgttgttgtcggatatacgcaatattttaggattgctcgatccccaccaaactgaa
aaaagaaacatcatcccggtttccctgggggcctgtttgggtgagtgccaaacgcaacgc
caacagcgtctgaccgagttgaaagccggttgggccgagcgggccgaaggcctgcgcgat
tgggtggtgtttcaaaccgaacccaaggtgtgcccatgggatcggcgcaagctgtcggca
gccaacgtgcgcaagtggatgcaaaccgtcatcgactgggcgcaagatcccgacgccgag
accctcgcgctctccgatgcggcctggcaccgcatccgccccgaaggcatcgccgaagcg
tggaaaggcaagggcgtccagccggctttgcccgaagcctgcgccgcgttcgtcaccctg
gcggcggatttggcgagtttgccgtcgctggccccggcgctgcgcctgcatgcggcgcaa
cacatcgcccaacgcttggaggaactcaagcgccagagcggccacttcggttttgccgat
ctgctggtgcgcctagataccgccctgcaaagcgagagcggcgagcgtctgcgccaacgc
atcctcacccaaaccccggtggcgctgatcgacgagtttcaggacacatcggcgctgcaa
taccgcattttcgaccgcttgtaccgcgtcgccgagctggacgggcagggcgccacgccc
accgcgctgctgctcatcggcgacccgaagcaatccatctaccgcttccggggcgcggac
atcgccagctatttggcggcgcgccgtgccactgcggggcgccattacgttctggacacc
aattaccgctcgacgcaagccgtggtgcaggccatcaaccactgctttgcccaggccgag
cagcgccccggtgccggcgcatttggttatcgcgctgtggatgacgatggcgtgatcgac
aacccgctgccctttgtgacagtggcaacccagggccgcgccgagcagtttttgcacgcc
ggggcggagcaaccggcgttgacgctggtgcatgccctccagctcgcccccgccgaaacc
catctgcgccatttggccgaactgtgcgcggcgcaaatcgtcacctggctgaacgaagcg
cgcaccgggtttgctgtgcccggtgatcccagcacctggtgccgtttacgcccggccgac
attgccgtgttggtgcgcacgggccgcgaggctcgggccatcaaaaaggcgttagaacgg
cggcgtgtggcgtcggtgtacctgtcggatcgggaatcggtgttcaacagcgatgaagcg
ggcgatctgctgcacctgttgcgggccgtcgcccagccgttggacagccgtttggtgcgc
gctgccctggccacgcgcacgctggggctgaatttggcgcagttggctcaactcgccgcc
gacgatgaggctttcgacaaagaggccgaaaaactgcgcgagctgcacggcgtctggcaa
cgccaaggcgtgctgacgctgctgcgtcaggtgctacaccgctacgatttgccggcgcgt
tggctcgatccgcaagccgatccgggcggcgagcggcgcctcaccaatttcttgcatttg
gccgagctgttgcaaagcgccagccgcgagttggacggcgaacaagcgttgatccgctgg
ttaaccgagcaatgtgaagccgccgccgccggccaagtcagcggtgacgagcaggtggtg
cgcctggaaagtgatgccgacttggtcaaggtcgtcaccattcacaaaagtaagggcttg
gaatatccggtggtgtgcttgccgtttgcggtgagctttcgcccggaggccaagggccac
accacggcgtttgcttggctggacgaacacggccaacgtcaattgcgcttggacatcgac
gatgaactcatcgcccgcgccgatgccgaacgcttgcgcgaagacgtgcgcctgttgtac
gtcgccctgacccgtgcccgccatgccctgtggttgggcttcgcggccctgaccgtgggc
aacagcaaagagtgccaaacccaccgcagcgccgccggccacctgctgacccaccccgac
gccaccgacgccgacaccctcgcccagatgctggcccgattggcccaaggttgccccgac
atcgccctgcaacccgcccccgaagagcgccccccgctggtgcctctgacccgccgcgaa
caagctgccaacctcaccaccgcgcagacgtacaacggccaattcgaccgcacctggggc
atcgccagcttttcctccctggtgcgtgccatgacctcgacgcacaccgtcatccacgcc
ccccgtcccgccgacgacgaacccccggctgccgagttcccctctccttcaggagagggg
ccaggggtgaggtggcaccgcttcgagcgcggccccctcgccggtaatttcctgcatgag
caactcgaatggctggcccacgaagccttcgctttggccgacgattccagcttggccgag
cgcctgcgccgtcgctgcgaacgcgccgggcgaggcgcccaagccgatgatgtcatcgcc
tggctgagtgcctggatgcaccaacccctgaccgggccgggcgtgcccctgccgcacttg
caccgccttctgcccgaaatggagttctggctgccagcggcgcaactgcctgccgcgacg
gtcgatgccctgtgccggcgccacctgctgcgcgatctcgccccggaggcgccccgtccc
accctggtggcgcgtgagctgcacggcctggtgatgggtttcgccgatttggtgtttgaa
cacgatggccgttattgggtactggactacaagagcaaccaactcggccccgagggttcg
tcctacaccgccgccgccctgaccgaagccatggccctgcaccgttacgacgtgcaagcc
gccctctacctgctggcattgcaccgcctgctgcgccagcgcctgggcgatgtctacgac
cccgccagccaactcggcggggcgatttacctgttcttgcgcggcttggacggcccagtg
caagggcagcatctcgttcctcccgatctggccttgctggaagcgctggacgccttgttg
acccaggaggccactgcatga
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