Vitreoscilla filiformis: VITFI_CDS2276
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Entry
VITFI_CDS2276 CDS
T04960
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
vff
Vitreoscilla filiformis
Pathway
vff02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
vff00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
VITFI_CDS2276
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vff03021
]
VITFI_CDS2276
Transcription machinery [BR:
vff03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
VITFI_CDS2276
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
ASM78054
UniProt:
A0A221KG96
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All DBs
Position
2387825..2390173
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AA seq
782 aa
AA seq
DB search
MTAKKSADSAAATPTADATDVKKPRKVVRVVKAGTLTATTSATPAPIVAAPVVAAPAKAE
APAEDAKPKRGRKPKAEKTDKADAAAAPATKGAAKGKAAAATAKKPAEDLEDDLADIESE
LEGEVEPEVEAAADDSSEDKPKAKPLRMKVSRAKERALMREFGLDETTLTEEEVAKRRQE
LKTLIKMGKTRGYLTHQEINDHLPEKLVNEEILEAIISMLNDMGIAVYEQAPDAATLLIS
GSNTATATDEEAEEAAEAALSTVDSEFGRTTDPVRMYMREMGSVELLTREGEIEIAKRIE
GGLQAMMLAISASPTTIAEILSMAEKIASGDAQISDVVDGFVAEDEADDYVAEEDFDEFD
EEDDDDGNGGSKALTKKLEELKNAALVKFAELRQHFEDMRTAFDKHGYKSTAYMRAQASV
SSTLMTIRFTVKTIEKLCDLLRSQVDDVRRYEREIRKIVVDKCGVAQEYFIKHFPPNALN
LQWAVNEANAGKPYSAILGRNLPAVQELQQKLIDIQARAVVPLDDLKEINKRMNEGEKAS
RDAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYAT
WWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQHLQEFGYEPDAPTLAEKMEMPED
KIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDTNNTAPVEAAMQAGLRDVVKDILDSLT
PREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKAIRKLKHPSRSDKLRTYLD
NI
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccaagaaatccgccgactccgcagcggccacccccaccgccgacgccaccgat
gtcaagaaaccacgcaaagtggtgcgcgtcgtcaaggccggcacgttgaccgctacgacc
agcgccaccccggctccgatcgtcgctgcacccgtggtcgccgcccccgccaaggccgag
gccccggcagaagacgccaagcccaagcgcggtcgcaagcccaaagccgaaaaaaccgac
aaggccgacgccgccgccgctcccgccaccaaaggcgccgccaagggcaaagccgccgcc
gccaccgcaaagaaacccgccgaagatctggaagacgatctggccgacatcgaatccgag
ctggaaggggaagtcgaacccgaggtcgaagccgccgccgacgacagcagcgaagacaag
cccaaggccaagccgctgcgcatgaaggtcagccgcgccaaagagcgcgccctgatgcgc
gagtttggcttggatgagaccacgctcaccgaagaagaagtcgccaagcgccgccaagag
ctgaaaacgctcatcaaaatgggcaaaacgcgtggctacctcacccaccaggaaatcaac
gaccacttgccggaaaagctggtcaacgaagaaatcctggaagccatcatctcgatgctc
aatgacatgggcatcgcggtctacgaacaagcaccggacgccgccacgctgctgatctcc
ggcagcaacaccgccaccgccaccgacgaagaagccgaagaagccgccgaagccgcgctc
tccacggtggattcggaatttggccgcaccaccgatccggtgcgcatgtacatgcgcgaa
atgggctcggtcgagctgctgacccgcgaaggcgaaatcgaaatcgccaagcgcatcgaa
ggcggcttgcaggccatgatgctggccatctccgcctcgccgacgaccatcgctgaaatt
ttgtcgatggccgaaaagatcgcttcgggtgacgcgcaaatttccgatgtggtcgatggt
ttcgtcgctgaagacgaagccgatgactacgtggccgaagaagacttcgacgagttcgac
gaagaagacgacgacgacggcaacggtggctccaaggcgctgaccaagaagctcgaagaa
ctgaagaacgccgcgctggtgaagttcgccgagctacgtcaacacttcgaagacatgcgc
acggcgttcgacaaacacggctacaagtccaccgcctacatgcgggcgcaggcgtcggtc
agcagcacgctgatgacgattcgcttcaccgtcaagaccatcgaaaagctgtgcgacctg
ctgcgctcgcaggtggacgatgtgcgccgctacgaacgcgagatccgcaaaatcgtggtg
gacaagtgcggcgtggcgcaggagtacttcatcaagcacttcccgcccaatgcgctgaac
ctgcaatgggccgtgaacgaagccaatgctggcaagccgtacagcgccatcttgggccgc
aacctgccagccgtccaagaattgcagcagaagttgatcgacatccaagcccgcgccgtg
gtgccgctggatgacctcaaagagatcaacaagcgcatgaacgagggcgaaaaagcctcg
cgtgatgccaagaaggagatgatcgaggccaacctgcgtttggtgatctcgattgcgaag
aagtacaccaaccggggtttgcagttcctcgacctgattcaagaaggcaacatcggcctg
atgaaggcggtggacaagttcgaataccgccggggctacaagttctcgacctacgcaacg
tggtggattcgccaagccatcacgcgctcgattgccgatcaggcgcgcaccatccgcatc
ccggttcacatgatcgagacgatcaacaagatgaaccgcatctcgcgccagcacttgcaa
gaattcggctacgagccggacgcgccaacgctggccgaaaagatggaaatgccggaagac
aagatccgcaagatcatgaagatcgccaaagagccgatctccatggaaacgccgatcggg
gacgacgacgacagccacctgggcgacttcatcgaggacaccaacaacaccgcccccgtg
gaagccgcgatgcaagccggcctgcgcgatgtggtgaaggacatcctcgacagcctgacc
ccccgcgaagccaaggtgctgcgcatgcgcttcggcattgaaatgtccaccgaccacacg
ctggaagaagtgggcaagcagttcgatgtgacgcgtgagcgcatccgccagatcgaggcc
aaggcgatccgcaagctcaagcacccgagccgttcggacaagctgcgcacgtacttggac
aacatctaa
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