Vitreoscilla filiformis: VITFI_CDS2407
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Entry
VITFI_CDS2407 CDS
T04960
Name
(GenBank) integration host factor subunit beta
KO
K05788
integration host factor subunit beta
Organism
vff
Vitreoscilla filiformis
Brite
KEGG Orthology (KO) [BR:
vff00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vff03032
]
VITFI_CDS2407
03036 Chromosome and associated proteins [BR:
vff03036
]
VITFI_CDS2407
03400 DNA repair and recombination proteins [BR:
vff03400
]
VITFI_CDS2407
DNA replication proteins [BR:
vff03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
VITFI_CDS2407
Chromosome and associated proteins [BR:
vff03036
]
Prokaryotic type
Nucleoid associated proteins
IHF (integration host factor)
VITFI_CDS2407
DNA repair and recombination proteins [BR:
vff03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Facilitator
VITFI_CDS2407
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_euk_1
Motif
Other DBs
NCBI-ProteinID:
ASM78185
UniProt:
A0A221KGU9
LinkDB
All DBs
Position
complement(2537041..2537319)
Genome browser
AA seq
92 aa
AA seq
DB search
MTRSDLAVRLAERFPQLTQRDTELAVKTVLDAMAEALALGHRIEIRGFGSFSISHRPPRV
GRNPRSGAQVDIPEKRVPHFKPGKALREGVDA
NT seq
279 nt
NT seq
+upstream
nt +downstream
nt
atgacccgctccgacctcgccgtgcgattagccgaacgtttcccgcagctcacgcagcgg
gataccgagctggccgtcaaaaccgtgctcgacgccatggcggaagccttggcgctgggg
catcgcatcgagatccgggggtttggcagcttttcgatcagccaccggccaccgcgtgtg
gggcgcaatccccgcagcggggcgcaggtggacatccccgaaaagcgggtgccccacttc
aagccgggcaaagccttgcgtgaaggtgtggacgcctga
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