Vitreoscilla filiformis: VITFI_CDS2716
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Entry
VITFI_CDS2716 CDS
T04960
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
vff
Vitreoscilla filiformis
Pathway
vff03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vff00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VITFI_CDS2716
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vff03019
]
VITFI_CDS2716
03016 Transfer RNA biogenesis [BR:
vff03016
]
VITFI_CDS2716
Enzymes [BR:
vff01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
VITFI_CDS2716
Messenger RNA biogenesis [BR:
vff03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
VITFI_CDS2716
Transfer RNA biogenesis [BR:
vff03016
]
Prokaryotic type
tRNA degradation factors
VITFI_CDS2716
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
ASM78493
UniProt:
A0A221KI35
LinkDB
All DBs
Position
complement(2861610..2863895)
Genome browser
AA seq
761 aa
AA seq
DB search
MAKILKNNQENNSTLMAELEGTVQGHRDGHGFVQPDAGGDSIYLSPQEMRGVLHRDRVKV
RVVRLDRKGRPEGRVVDILERRKTPIIGRLLLEKGAWIVAPEDKRYGQDILIPKNAVASA
QAGQVVSVELTEPPSMFSQPVGRVVEVLGQIDDPGMEIEIAVRKYGVPHIFSPETVAQAA
ALPDKLRPADYKQRIDLRDVPLVTIDGEDARDFDDAVYCEPHSSGRGKSALKGWRLLVAI
ADVSHYVKPGEALDKDAFERATSVYFPRRVIPMLPEKLSNGLCSLNPEVERLSMVCDMVI
DEEGEIQAYQFYPAVIRSHARLTYTEVAAALANTRGPEAQKRAELVPHLVNLHELYRALL
KARNRRGAVDFETTETQIVCDELGRIQQIVPRVRNDAHRLIEETMLAANVCAADFIAEKK
HPGLFRVHEGPTPEKRQALQNYLKALGLGFTLSDDPKPAELQAISKATQDRPDAQQIHTM
LLRSMQQAIYTPHNSGHFGLAYSGYTHFTSPIRRYPDLMVHRVIKALLTGKRLAVKNVGA
GVERQTMRLGGRGLPPAPEPGAKKPTRSGAAEVPLWEQIGLHCSANERRADEASSDVQAW
LKCRYMRERLGEEFMGTVSAVTSFGVFVTLDALYVEGLIHITELGGEYFRFDEVRQELRG
ERTGLRYVIGTKVKVQVSRVDLDGRRIDFRIVREGDGERLLAKGRSAESASAVQTLAATQ
QADRQAKRAAKSAKSIQGARAAQAGRGNVARRAATSRKKKG
NT seq
2286 nt
NT seq
+upstream
nt +downstream
nt
gtggcaaaaattttgaaaaataaccaagaaaataactcaacattaatggccgagctggag
ggcacggtgcaaggtcaccgggatggtcacggcttcgtccagccggatgcggggggggac
agcatctatctcagcccgcaggaaatgcgcggtgtgttgcatcgagaccgcgtcaaagtg
cgcgtggtgcggttggatcgcaaaggccggcccgaaggacgggtggtggacattctggag
cgccgcaaaacccccatcattggccggttgctgctggagaagggggcgtggatcgtcgca
ccggaagacaagcgttacgggcaagacatcctcatccccaaaaacgccgtggccagtgcg
caggcggggcaggtggtgtcggtggagttgaccgagccaccgagcatgttctcccagccc
gtggggcgcgtggtggaagtgctggggcagatcgacgaccctggcatggaaatcgaaatc
gcggtgcgcaaatacggcgtgccgcacattttcagcccggaaaccgtggcccaagccgcc
gcgttgccggacaaactgcgcccagccgattacaaacagcgcatcgacctgcgcgatgtg
ccactcgtcaccatcgacggggaagatgcgcgggattttgacgatgcggtgtactgcgag
ccgcacagcagcggtcggggcaagtcggcgctgaagggctggcgcttgctggtggcaatt
gccgacgtgagccattacgtcaaacccggcgaggcgctggacaaggatgcgttcgagcgt
gctacgtcggtgtattttccgcgtcgggtgattccgatgttgccggagaaactttcgaac
gggctgtgttcgctgaatcctgaggtcgaacgcctgtcgatggtgtgcgacatggtgatc
gacgaggaaggcgagattcaggcttaccagttttacccggcagtgatccgctcgcacgcc
cgcctgacttataccgaggtggctgccgccctggccaacacacgcgggccggaagcgcaa
aagcgcgccgagctggtgccgcatctggtgaacctacatgagctgtaccgggcgctgctc
aaggcgcgcaaccggcgtggggcggtggactttgaaaccaccgaaacccagattgtctgt
gatgagctggggcgcattcagcaaatcgtgccgcgtgtgcgcaacgatgcacaccgcctc
atcgaagaaaccatgctggcggccaacgtctgcgcggcagatttcattgcggagaaaaag
catcctggcctgttccgtgtccacgaaggcccgacgcccgagaaacgtcaagccctgcaa
aactatctcaaagcgctggggctgggttttacgctgagcgacgacccgaaaccagccgag
ttgcaagccatctccaaagccacacaagaccgaccagacgcacagcaaattcacaccatg
ttgctgcgttcgatgcagcaagcgatttacacgccgcacaacagcggccatttcggtctg
gcttactcgggttatacgcacttcaccagcccgattcgccgttatccggatttgatggtg
catcgcgtcatcaaagccctgctgacgggcaaacggttggcggtgaaaaacgtcggcgct
ggggtggagcgccaaaccatgcgcctgggcgggcggggcctgccgccagcgcccgaaccg
ggggctaaaaagcccacgcgcagcggggcggcggaagtgccgttgtgggagcaaatcggc
ctgcattgcagcgccaacgagcgccgcgccgacgaggcatcatccgatgtgcaagcttgg
ctcaaatgccgttacatgcgcgagcgcttgggcgaggagttcatgggcaccgtgtcggcg
gtgacgagttttggcgtgttcgtcacgctggatgcgttgtatgtcgaagggctgatccac
atcaccgagctgggtggcgagtatttccgctttgacgaagtgcgccaggaactgcgcggc
gagcgcacgggcttgcgttatgtcatcggcaccaaggtcaaggtgcaggtgagccgggtg
gacttggacgggcgtcgcattgacttccgcatcgtgcgcgagggtgatggcgagcgtttg
ctggccaaggggcgttcggcggagagcgcaagcgcggtgcagactttggcagccacgcag
caagcggatcgacaagccaaacgcgctgccaaatccgccaaatcgatccagggcgcccgg
gctgcgcaggcggggcgggggaacgtggctcggcgggctgccacctcgcgcaagaaaaag
ggttag
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