Aliivibrio fischeri ES114: VF_0056
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Entry
VF_0056 CDS
T00236
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
vfi
Aliivibrio fischeri ES114
Pathway
vfi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vfi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VF_0056 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vfi03019
]
VF_0056 (rhlB)
Enzymes [BR:
vfi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VF_0056 (rhlB)
Messenger RNA biogenesis [BR:
vfi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VF_0056 (rhlB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AAW84551
UniProt:
Q5E8U5
LinkDB
All DBs
Position
I:complement(62980..64278)
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AA seq
432 aa
AA seq
DB search
MKKTHITEQNFADLGLQPQVIDGLNAKGFIKCTPIQAKALPVLLAGQDIAGQAQTGTGKT
LAFLTATFNHLLTTPAPEGRKITQPRAIIMAPTRELAIQIFNDAESLIASTGLKAALAYG
GERYEKQQQVIEQGVDILIGTTGRIIDFYKQGHIDFKMIQAVVLDEADRMFDLGFIKDIR
FIFRRMPAPTERLNMLFSATLSYRVQELAFEHMQEPEHVVVEPEQKTGHRIKEELFYPSN
DHKMALLQTLIEEEWPDRAIIFANTKHKCESVWGHLAADKHRVGLLTGDVPQKKRERILE
EFTQGNVDILVATDVAARGLHIPQVTHVFNFDLPNEAEDYVHRIGRTGRAGASGNSISFA
CEEYAINLPAIEEYIEHSIPQSDYDASALLEDLPAPLRLQRRPQQNRRNNNGQRQGGNRK
HTRPRQPRNTQS
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagacgcacatcacagagcaaaactttgccgacctaggtttacagcctcaggtt
atcgatggtttgaatgcaaaagggttcatcaaatgtaccccaattcaagctaaggcattg
ccggtactgctcgccggccaagacattgcaggccaggcccaaacgggtacaggtaagacg
ctagcgttccttactgctacttttaatcacctattaacgacaccagcacctgaaggtcgt
aaaatcacacaaccgcgtgccattatcatggctccgacacgtgaattagcgattcaaatc
ttcaatgatgctgaatcacttatcgcaagtacaggcctaaaagcggcactggcttacggt
ggtgagcgttatgaaaaacaacaacaagtgattgagcaaggtgttgatattttgatcggt
acaaccggtcgtattatcgacttttacaagcaaggtcacatcgactttaagatgattcaa
gctgttgttcttgatgaagccgatcgtatgttcgatttaggttttattaaagatattcgc
tttatcttccgtcgtatgcctgcgccaacagagcgtttaaacatgctgttctctgctacg
ttatcttaccgtgtgcaagagcttgcgtttgaacacatgcaagagccagagcacgttgtt
gttgagccagaacaaaaaacaggtcatcgcattaaggaagagcttttctatccttcaaat
gatcataaaatggcattacttcaaacacttattgaagaagaatggccagatcgtgcgatt
atctttgcaaacacaaaacacaaatgtgaatcagtttggggtcacctagctgctgataaa
caccgtgttggtcttctaactggtgacgttcctcagaaaaaacgtgagcgcattttagaa
gagttcacacaaggtaatgttgatatcttagttgctaccgatgtggctgctcgtggtcta
catattccacaagtaacgcatgtgtttaactttgatttaccaaacgaagcagaagattac
gttcaccgtattggccgtacaggtcgtgcaggtgcaagcggtaactctattagcttcgca
tgtgaagaatacgcaattaaccttcctgctatcgaagaatatattgagcattctattcca
caatctgattacgacgcttcggcattactagaagatttgccagctccactacgacttcaa
cgtcgtccacagcaaaatcgtcgtaataacaatggtcaacgtcaaggcggcaaccgtaag
catactcgcccacgtcaaccacgtaatactcagtcgtaa
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