Aliivibrio fischeri ES114: VF_0058
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Entry
VF_0058 CDS
T00236
Symbol
rho
Name
(GenBank) transcription termination factor
KO
K03628
transcription termination factor Rho
Organism
vfi
Aliivibrio fischeri ES114
Pathway
vfi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vfi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VF_0058 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vfi03021
]
VF_0058 (rho)
03019 Messenger RNA biogenesis [BR:
vfi03019
]
VF_0058 (rho)
Transcription machinery [BR:
vfi03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
VF_0058 (rho)
Messenger RNA biogenesis [BR:
vfi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
VF_0058 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
OB_RNB
AAA_22
AAA
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
AAW84553
UniProt:
Q5E8U3
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All DBs
Position
I:64957..66216
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AA seq
419 aa
AA seq
DB search
MNLTELKNRSVSDLVALGETLGLENLARLRKQDIIFSILKQHAKSGEDIFGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIAGKIRPPKDGERYFALLKVNAVN
HDRPDNARNKILFENLTPLHANDRLRMERGNGSTEDITARVLDLASPIGRGQRGLIVAPP
KAGKTMLLQNIAQSIAHNHPECELMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDF
NRSGTRREELLTKADELQKMWILRKIVHPMGEIDAMEFLIDKLSMTKTNDEFFDAMRRQ
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttactgaacttaaaaaccgatctgtatcggaccttgttgctcttggcgaaaca
ctaggcctagaaaacttagctcgtctaagaaaacaagacattattttttctattcttaag
cagcacgcaaagagtggcgaagatatattcggtgacggtgttctagagattctgcaagat
ggctttggtttccttcgctcggcagacagttcttacttggcgggtcctgatgatatttat
gtatcgccaagccaaattcgtcgttttaacctgcgtactggtgataccattgccggaaag
attcgcccaccaaaagatggcgaacgctactttgctcttcttaaagtaaacgctgtaaac
cacgaccgtcctgataacgcacgtaataaaatcctttttgaaaaccttactcctctacat
gctaacgatcgtttacgcatggaacgtggtaatggttcaacagaagatattacagcacgt
gttcttgatttagcatcaccaattggccgtggccaacgtggtctgattgttgctccgcca
aaagcgggtaaaacaatgttgcttcaaaacattgctcaaagtattgcgcataaccaccct
gagtgtgagttgatggttttacttatcgacgaacgtccagaagaagtaacagagatgcaa
cgcctagttaaaggcgaagttgttgcatcaacgtttgatgagccagcgtctcgtcacgtt
caagttgctgaaatggttatcgagaaagcaaaacgtcttgttgaacataagaaagacgtg
gttatcttacttgactcaatcactcgtctagctcgtgcatataacacagtgatcccatca
tctggtaaagttcttactggtggtgtagatgcaaacgcacttcaccgtcctaagcgcttc
tttggtgctgcacgtaacgttgaagaaggtggtagcttaactatcatcgcaacagcactt
gttgatactggctctaaaatggatgaagttatctacgaagagtttaaaggtacaggtaac
atggaattacacttaaaccgtaagattgcggaaaaacgtgtattcccagctatcgacttt
aaccgttcaggtactcgtcgtgaagagttgttaactaaagctgatgagctacagaaaatg
tggattctacgtaagattgttcacccaatgggcgaaattgatgcgatggaattcctaatt
gataaactatcaatgacgaaaacaaatgatgagttctttgatgcgatgcgtcgtcagtaa
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