Aliivibrio fischeri ES114: VF_0070
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Entry
VF_0070 CDS
T00236
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
vfi
Aliivibrio fischeri ES114
Pathway
vfi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vfi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VF_0070 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vfi03019
]
VF_0070 (recQ)
03400 DNA repair and recombination proteins [BR:
vfi03400
]
VF_0070 (recQ)
Enzymes [BR:
vfi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VF_0070 (recQ)
Messenger RNA biogenesis [BR:
vfi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VF_0070 (recQ)
DNA repair and recombination proteins [BR:
vfi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
VF_0070 (recQ)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
AAW84565
UniProt:
Q5E8T1
LinkDB
All DBs
Position
I:81298..83133
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AA seq
611 aa
AA seq
DB search
MSSMIAEQPMEEVSPSYTVLKDVFGYQEFRVGQEEVINAVLDSKDCLVIMPTGGGKSLCY
QIPALVFEGLTLVISPLISLMKDQVDQLKANGVKAECLNSTIEREEQIAIWNRVNSGQVK
MLYVSPERVMMRDFMDRLESLNLCMIAVDEAHCISQWGHDFRPEYASLGQIKQRFPSVPI
MALTATADEATRKDILHRLSLPEPHQYLGSFDRPNIRYTVLEKHKPVSQIVRYLATQKNQ
CGVIYCGSRKKVEMLTEKLCNNHIRAASYHAGLDLDERNYVQEAFQRDDIQIVVATVAFG
MGINKSNVRFVAHFDIPKNIESYYQETGRAGRDGLPAEAVMLYDPADIVWLRKLVEEKPE
GPQKLVESHKLNAMTAFAEAQTCRRQVLLNYFGEYSAKPCGNCDVCLDPPKQFDGTEAAQ
KALSCVYRVNQSFGVGYVVEVLRGLKIARIREHGHDKLSTYGIGKEHTHEYWVSIIRQLI
HKGLLVQNITRNSTLQLTEEARPILKGQEPLELAVPRLDIAAKTAKSEKLNNRNYDKQLF
AKLRKLRKSIADRDDLPPYVVFSDATLMDMADILPTSYGEMLAVNGVGQKKLEKYADPFL
DLIEMHLTGQG
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atgtccagcatgatcgcagagcaaccaatggaagaggtgtcgccaagttacacggtttta
aaagacgtgtttggctaccaagaattccgtgttggacaagaagaagtcatcaatgccgtt
cttgatagtaaagattgtcttgtgatcatgccgacaggtggcggtaaatcattgtgttat
cagatccccgcattggtttttgaagggttaacgttagttatctctcccttaatatcctta
atgaaagaccaagttgatcagcttaaagcgaatggggttaaagcggaatgcttaaactca
accattgagcgtgaagagcaaattgctatttggaaccgagtgaattcgggtcaggtcaaa
atgctttatgtgtcacctgagcgagtgatgatgcgtgattttatggatcgtttagagtct
ctaaacttgtgtatgatcgctgttgatgaagcgcactgtatttctcaatggggtcacgat
tttcgtcctgaatacgcatctctaggacagattaaacagcgcttccctagtgttcctatc
atggctctcactgcgactgctgatgaagccactcgtaaagatattctacatcgtctttct
ttgcctgagccgcatcaatacttaggcagctttgatcgcccaaatattcgttatacggta
ttagaaaagcataaaccggtgagccagatcgttcgttatcttgcgactcaaaaaaatcaa
tgtggtgtgatttattgtggtagtcgaaagaaagttgaaatgctgactgagaagctctgc
aacaaccatattcgtgcggcgtcttatcacgcaggtttagatttggatgagcgtaattac
gttcaagaagcctttcaacgagatgatattcaaatcgttgttgcgacggttgcttttggt
atggggatcaataaatccaacgtacgttttgttgctcactttgatattccaaagaacatc
gaatcttattaccaagagacaggtcgagcagggcgtgatggtctgccagctgaagcggtc
atgctttatgatcctgccgatatagtttggttaagaaaactggttgaagagaagcctgaa
ggtcctcaaaagcttgtagaaagtcataaattgaatgctatgaccgcctttgctgaagca
caaacttgtcgtcgtcaggttcttttaaactattttggtgaatacagtgctaagccctgt
ggtaactgtgatgtgtgtttagatccgccaaagcaatttgatggaacagaagctgcacaa
aaagcactttcttgtgtttatcgagtaaatcaaagttttggtgttggctatgtggtggaa
gtgctacgtgggcttaaaattgctcgtattcgtgagcatgggcacgataagttatcgact
tacggtattggcaaagaacacacccatgaatactgggtaagtattattcgtcagttaatt
cataaaggattattggtacagaatattacgcgcaactctacactacagcttacggaagaa
gcccgtccgattttaaaaggacaagagccgttagagcttgcggttccacgactggatatt
gccgctaaaactgccaaatcagagaaattgaataatcgtaattacgataagcagttgttt
gctaagttacgtaagctgcgtaaatccatcgctgatcgagatgacttaccgccttatgtg
gtattcagtgatgcaaccttaatggatatggctgacattttacctacctcttatggagag
atgttagcggtaaatggcgtagggcagaagaaactcgaaaaatacgcagatccattttta
gatttaattgaaatgcacttaacaggacaaggataa
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