Aliivibrio fischeri ES114: VF_0074
Help
Entry
VF_0074 CDS
T00236
Symbol
polA
Name
(GenBank) fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5' exonuclease
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
vfi
Aliivibrio fischeri ES114
Pathway
vfi03030
DNA replication
vfi03410
Base excision repair
vfi03420
Nucleotide excision repair
vfi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vfi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VF_0074 (polA)
03410 Base excision repair
VF_0074 (polA)
03420 Nucleotide excision repair
VF_0074 (polA)
03440 Homologous recombination
VF_0074 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vfi03032
]
VF_0074 (polA)
03400 DNA repair and recombination proteins [BR:
vfi03400
]
VF_0074 (polA)
Enzymes [BR:
vfi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
VF_0074 (polA)
DNA replication proteins [BR:
vfi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
VF_0074 (polA)
DNA repair and recombination proteins [BR:
vfi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
VF_0074 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
VF_0074 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH_5
Obc1_cap
Erythro-docking
HHH
Motif
Other DBs
NCBI-ProteinID:
AAW84569
UniProt:
Q5E8S7
LinkDB
All DBs
Position
I:86562..89360
Genome browser
AA seq
932 aa
AA seq
DB search
MARIPDNPFILVDGSSYLFRAYHAAPNFTNGDGQPTGAVYGVINMLRSLLKQFETDRIAV
IFDAKGKTFRNDMYPEYKANRPPMPDDLRCQIEPLHKLIKAMGLPLVSIPGVEADDVIGT
LASQASKAGIPVLISTGDKDMAQLVDENVTLINTMTNVIMDPEGVVEKFGIGPELIIDYL
ALMGDKVDNIPGVPGVGDKTAKALLQGIGGLDALYEHLDDIAPLGFRGSKTMAKKLIDNK
EGAYLSYELATIKLDVELDKTPEEFVKQEPNVDELIQMFGQMNFKRWLTEMLDGSDGKIV
SHETSSNSVSTSSKQDDAEEELIVAAQVDRSKYETILTKEAFSVWLDKLNNADVAAFDTE
TDSLDYMVANLIGLSFAVEEGEAAYVPVAHDYLDAPEQLDRDWVLEQLKPYLEDDNKAKV
GQNLKYDASVLARYDIEMKGIKFDTMLESYVYNSVAGKHNMDSLALRYLQHNTISFEEIA
GKGKKQLTFNQIALEQAAPYAAEDADITLRLHHVLNAKLEADEKLKSVFTDIELPLVSVL
SRMERKGVYIDDMLLSAQSVEIGQRLDELEKAAFEVAGEEFNMNSPKQLQTILFEKMELP
VIKKTPSGAASTNEEVLQELALDYPLPKLILEYRGLAKLKSTYTDKLPKMINPSTGRVHT
SYHQAVTATGRLSSTDPNLQNIPIRNEEGRRIRQAFVAPHGWKILAVDYSQIELRIMAHL
SQDKALLAAFSAGKDIHAATAAEVKGVSIEEVTSEDRRRAKAINFGLIYGMSAFGLAKQI
GIPRGEAQDYMNVYFERYPGVMQYMEETRLLATEQGYVETLYGRRLHLPEINARNGMRRK
AAERAAINAPMQGTAADIIKKAMILVDEWVETEGKDRVNLLMQVHDELVFEVKEDALDEV
TTKVRELMEQAAQLDVPLVAEAGFGNNWDEAH
NT seq
2799 nt
NT seq
+upstream
nt +downstream
nt
atggcaagaattcctgataatccgtttattttagtagacggctcttcttatcttttccgc
gcatatcatgctgcacctaacttcactaatggtgatggacaaccaacaggtgcggtatat
ggcgtaattaacatgcttcgtagtctgttaaagcaatttgaaaccgatcgtattgcggtt
atcttcgatgcaaagggcaaaacgttccgtaatgatatgtacccagagtacaaagcaaat
cgtccaccaatgcctgatgatctgcgttgccagattgagccactacataagctaattaaa
gcgatgggcttgcctttagtttctattccaggcgtagaagcggatgatgtaatcggtacg
ttagcttctcaagcatcaaaagctgggatcccagttcttatcagtactggtgataaggat
atggcacaattagttgatgaaaatgtcactctgattaataccatgaccaatgtgattatg
gatcctgaaggtgtggttgagaagtttggtattggtccagagcttattattgattactta
gcattaatgggcgataaggtggataacattcctggtgttccaggtgttggtgataaaacc
gctaaagcattattgcaaggcattggtggtttagatgctttatatgaacatcttgatgat
attgctcctcttggttttcgtggttctaaaaccatggctaaaaagctaattgataacaaa
gaaggggcttacctttcttatgaattagcaacgattaagttggatgttgaactggataaa
acgccagaagagtttgttaaacaagagccaaacgtagatgagttgattcaaatgtttggt
caaatgaactttaagcgttggttaactgaaatgttagatggaagcgacggtaagatcgtt
tcacatgaaacatcgtctaatagcgtatcaacttcaagtaagcaagatgatgcagaagaa
gagctaattgttgccgctcaagtagatcgttcaaaatacgaaacgattttaactaaagaa
gcgtttagcgtatggctagataaactaaacaatgctgatgttgcggcttttgatactgaa
accgatagtttagattacatggtggcgaaccttattggtttatcatttgctgtagaagaa
ggtgaagcggcttatgttcccgttgcacatgattaccttgatgctccagaacaactagat
cgtgattgggtacttgagcaattaaagccgtatttagaagatgacaataaagcaaaagtt
ggtcaaaacttaaagtacgatgcgagcgttttagcgcgttatgatatcgaaatgaaaggc
attaaattcgatactatgcttgagtcttatgtgtataacagcgttgctggtaagcacaat
atggacagtttggcactgcgctatcttcaacataacaccatttcatttgaagaaattgca
ggtaaaggtaaaaagcaattaacctttaaccaaatcgctttagagcaagctgcaccttat
gccgctgaagatgcggatatcacattgcgtctgcaccatgtattgaacgcgaaattagaa
gccgatgaaaaactaaaatcagtatttacagatattgaattaccattggtatctgtcctt
tctcgtatggagagaaaaggcgtttatattgatgatatgttgctttcagcacaatcagtt
gaaatcggtcagcgtttagatgagttagaaaaagcagcatttgaagttgctggtgaagag
ttcaatatgaattcaccaaaacaacttcaaaccattctatttgagaaaatggaactgcca
gtaattaagaagacaccttctggagcggcatcgacaaatgaagaagtgctgcaagagcta
gcgcttgactacccattgcctaaattgattttagagtatcgtggcttagcgaaactaaaa
tcgacctatacagataaacttcctaagatgattaacccatctacaggtcgtgtgcatact
tcttatcatcaagcggtaacagcaacaggccgtttatcatcgacagatccaaacttacag
aatatcccaattcgtaacgaagaaggtcgtcgtattcgccaagcgtttgttgcccctcat
ggttggaaaattctagcagtcgattactctcaaattgaattgcgtattatggctcattta
tctcaagataaagcgctattagcggctttctcggctggtaaagatattcacgcagcgaca
gcagcagaagtgaagggcgtttctattgaagaggtgacttcagaggatcgtcgccgtgct
aaggcgattaactttggtttaatctacggtatgagtgcgtttggtcttgctaagcaaatt
gggatccctcgtggcgaagcacaagattacatgaatgtgtattttgagcgttacccagga
gtgatgcagtacatggaagagactcgtttattagcgacggaacaaggttatgttgagaca
ttatatggccgtcgtctgcatttacctgaaatcaatgcacgaaatggtatgcgtcgtaaa
gccgcagaacgtgctgcgattaatgccccaatgcaagggactgctgccgatatcattaag
aaagcgatgatcttggttgatgaatgggttgaaactgaaggaaaagatcgtgtgaatctt
ttaatgcaagtacacgatgaattggtttttgaagtaaaagaagacgcattagatgaagtg
acgactaaagtaagagaactaatggagcaagctgctcaacttgatgttccactcgttgct
gaagccggttttggtaataactgggatgaagcgcactaa
DBGET
integrated database retrieval system
