Aliivibrio fischeri ES114: VF_0105
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Entry
VF_0105 CDS
T00236
Symbol
rpoZ
Name
(GenBank) RNA polymerase, omega subunit
KO
K03060
DNA-directed RNA polymerase subunit omega [EC:
2.7.7.6
]
Organism
vfi
Aliivibrio fischeri ES114
Pathway
vfi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vfi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
VF_0105 (rpoZ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vfi03021
]
VF_0105 (rpoZ)
03400 DNA repair and recombination proteins [BR:
vfi03400
]
VF_0105 (rpoZ)
Enzymes [BR:
vfi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
VF_0105 (rpoZ)
Transcription machinery [BR:
vfi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
VF_0105 (rpoZ)
DNA repair and recombination proteins [BR:
vfi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
VF_0105 (rpoZ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb6
AmiR_N
Motif
Other DBs
NCBI-ProteinID:
AAW84600
UniProt:
Q5E8P6
LinkDB
All DBs
Position
I:complement(124616..124888)
Genome browser
AA seq
90 aa
AA seq
DB search
MARVTVQDAVEKIGNRFDLVLISSRRARQMQTGGKDALVPEENDKTTVIALREIEEGLIT
KELLDARERQEQQEQDAAELAAVSSITHNR
NT seq
273 nt
NT seq
+upstream
nt +downstream
nt
atggcacgtgtaaccgttcaagacgcagttgagaaaatcggcaaccgtttcgatctagta
cttatttcttctcgtcgcgcacgtcaaatgcaaactggtggtaaagatgcgctagtgcct
gaagagaacgataaaacaactgttatcgctcttcgtgaaattgaagaaggcctgatcact
aaagaattactagatgctcgtgagcgccaagagcaacaagagcaagacgcagctgaatta
gcagcagtaagctcaatcacacacaatcgttaa
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