Aliivibrio fischeri ES114: VF_0341
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Entry
VF_0341 CDS
T00236
Symbol
uvrA
Name
(GenBank) ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC
KO
K03701
excinuclease ABC subunit A
Organism
vfi
Aliivibrio fischeri ES114
Pathway
vfi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vfi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
VF_0341 (uvrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vfi03400
]
VF_0341 (uvrA)
DNA repair and recombination proteins [BR:
vfi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
VF_0341 (uvrA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
VF_0341 (uvrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
AAA_29
AAA_16
AAA_21
nSTAND1
RsgA_GTPase
AAA_23
AAA_25
nSTAND3
DnaJ_CXXCXGXG
NACHT
BCA_ABC_TP_C
Viral_helicase1
MMR_HSR1
ScfRs
Motif
Other DBs
NCBI-ProteinID:
AAW84836
UniProt:
Q5E810
LinkDB
All DBs
Position
I:complement(368330..371155)
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AA seq
941 aa
AA seq
DB search
MDKIEVRGARTHNLKDISLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY
ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLYARIGEPRC
PEHHVELTAQTISQMVDKALELPEGTKLMLLAPIVKERKGEHVKTLENLAAQGFIRARID
GEVCDLSDPPTLELHKKHTIEVVVDRFKVRDDLQQRLAESFETALELTGGIAVIDYMDDS
EHDPLIFSANFACPHCGYSMQELEPRLFSFNNPAGACGTCDGLGVQQYFDADRVVLDDKL
SIAEGAIKGWDQKNYYYFQMLGSLAKHYGFDLFAPFKSISKKFQNIILNGSGNEEIEFQY
SNDRGDLRVKRHPFEGILNTLDRRYKETESSAVRDDLSKYISTQSCSSCHGTRLRLEARN
VFVGDTTLPEICEMSIQDSMAFFSSLTLQGQKAQIADKVMKEINERLHFLINVGLSYLNL
SRSADTLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLKTLNHLRDLGNT
VIVVEHDEDAIRSADHIIDIGPGAGVHGGHIVAEGDYEAIISNPESLTGQYLNGTKEIAV
PNERVKADPKKQVELIGATGNNLKNVTLKLPVGLFTCITGVSGSGKSTLINDTFFKIAHT
QLNGATTSEPAPYKKIKGIEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIRELFSGTPE
SRSRGYKPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDVYVPCDVCSGKRYNRETLEVKY
KGKSIDEVLQMTIEDAHTFFEPVPVIARKLQTLMDVGLSYIRLGQAATTLSGGEAQRVKL
ARELSKRDTGKTLYILDEPTTGLHFHDIQQLLTVLHRLRERGNTIVVIEHNLDVVKTADW
IVDLGPEGGQGGGEIIAEGTPEDVAQVEGSHTARFLKPMLK
NT seq
2826 nt
NT seq
+upstream
nt +downstream
nt
atggataaaattgaagttagaggggccagaacccataacctaaaagacatcagcttaact
atcccaagagataagttgattgtaattacaggactttcaggttcaggtaagtcttcttta
gcctttgataccttatatgctgaaggccaacgacgttatgttgaatctttatcagcatac
gctcgtcaatttttatctctaatggaaaaaccagatgtagaccacattgaaggtctctct
cctgccatttcaatagaacaaaagtccacctctcataaccctagatcaacggttggaact
attaccgagatttacgattatttacgtcttctttatgctcgtattggtgaacctcgctgc
cctgagcaccatgttgagttaactgcacagactatcagccaaatggtagacaaagcatta
gagctaccagaaggcacaaagctgatgctattagctcctattgttaaagaacgcaaaggt
gagcatgttaaaacccttgaaaacctagctgcgcaagggtttattcgtgcacgtattgat
ggtgaagtttgcgatctttctgatccaccgacattagaattacataaaaaacatactatt
gaagttgtcgttgatcgctttaaggtcagagatgatcttcaacaacgcctcgcagaatca
tttgaaactgctttggaattaacaggcggtattgcggttatcgattatatggatgacagc
gaacacgatcctttaatcttctctgcgaactttgcctgcccacattgtggttatagcatg
caagaacttgagcctcgtctgttctcttttaataatccagctggggcctgtggcacttgt
gatggcttaggcgtacaacaatattttgatgccgacagagtcgttttagacgataagcta
agtatcgcagaaggtgctattaaaggttgggatcaaaaaaattattactatttccaaatg
ctaggttcacttgctaaacattatggttttgatttattcgcaccatttaaatccatttca
aagaaattccaaaacattattcttaacggctcaggtaatgaggaaattgaatttcaatac
agtaatgatcgtggtgatctacgagtcaaacgtcacccattcgaaggaatattaaacacc
ctagatcgtcgctataaagaaacggaatcaagtgctgttcgagatgatctatccaaatat
atttcaactcaatcttgttcaagttgccacggtacacgcttacgtttagaagcgagaaat
gtgtttgtgggtgataccacattgcctgaaatctgcgaaatgagtattcaagactcaatg
gctttctttagttcattaacgttacaagggcaaaaagcacaaattgccgataaagtaatg
aaagagattaacgaacgccttcactttttgattaatgttggccttagttatctcaattta
tcacgcagtgccgataccttatccggtggtgaagcccaacgtattcgtttagccagtcaa
atcggagccggcctagttggtgtaatgtatgttcttgatgagccatctattggtctccat
caacgagataatgaacgcctattaaagacgctaaatcatctccgagacttagggaatacg
gttatcgtagtagagcatgatgaagatgctattcgcagtgccgatcatatcattgatatt
ggaccaggagctggtgttcatggtggtcatattgttgccgaaggtgattatgaggccatc
atttcaaacccagaatcattaactggccaatatttaaatggaacaaaagaaatagcggta
ccaaatgagcgtgttaaagctgatccgaagaaacaagtagaacttattggagccacagga
aacaacttaaagaacgtgacattaaagctgcctgtaggattgtttacatgtatcacgggg
gtttcaggttcaggtaaatcaaccttaatcaatgatactttctttaaaattgctcatact
caattgaacggagccaccacatcagagccagctccgtataaaaaaattaaaggtatcgaa
cattttgataaagttatcgatattgatcaaagcccaataggtcgaacacctcgttcaaat
ccagcaacttatactggtattttcacaccgatacgtgagcttttctctggaacaccagaa
tcacgctctcgtggttataaacctggccgatttagctttaacgttcgaggtggacgttgt
gaagcatgtcagggtgatggtgttatcaaagtagaaatgcacttcttgccagacgtttat
gttccatgtgatgtttgttcaggtaagcgatataaccgcgagacattagaagtaaaatac
aaaggaaaaagtattgatgaagtccttcaaatgaccattgaagatgctcataccttcttt
gagccagttcctgttattgctcgtaagctacaaactttaatggatgttggactctcttat
attcgcttaggtcaggcagccaccactctttcgggtggtgaggctcaacgtgtaaaacta
gcaagagaactctcaaaacgagatacaggtaaaacactgtatatccttgatgaaccaaca
acaggtcttcactttcatgatatacaacaattattaacggttcttcatcgtctgcgtgaa
cgaggcaatacaattgtcgtaattgagcataacttggatgtagtgaaaacagctgactgg
attgttgatttaggtccagaaggcggtcaaggcggcggtgagatcatagcagaaggcaca
cctgaagatgttgcacaagttgaaggctctcatacggcacgcttcttaaaaccgatgcta
aaataa
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