Aliivibrio fischeri ES114: VF_0444
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Entry
VF_0444 CDS
T00236
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
vfi
Aliivibrio fischeri ES114
Brite
KEGG Orthology (KO) [BR:
vfi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vfi03009
]
VF_0444 (srmB)
Enzymes [BR:
vfi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VF_0444 (srmB)
Ribosome biogenesis [BR:
vfi03009
]
Prokaryotic type
rRNA helicases
VF_0444 (srmB)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
AAA_19
Utp25_C
CMS1
Permu_RdRp_thumb
Motif
Other DBs
NCBI-ProteinID:
AAW84939
UniProt:
Q5E7Q7
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All DBs
Position
I:complement(473008..474249)
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AA seq
413 aa
AA seq
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MLKTFADLDLSPNLLRALEEIDYQRPTQVQAMTIPEALEGKDILASAPTGTGKSAAFLLP
ALQHLDDFPRREPGPARILILTPTRELAIQVADEARQLAKYTRHKVFTITGGISYQDHAD
ILATTQDIVVATPGRLMEYIEAERFDCRAIETLILDEADRMLDMGFGPVVDRLSKECRWR
KQTFLFSATLEGRGVEGFTADLLNEPAEINAEPSRRERKKITQWYHRADNMAHKIDLLKN
ILTEQAERSIVFVKTRERLAELRGHLETAKIPCAWIQGEMAQESRNNAISRFRDGTVNVL
IATDVAARGIDLPDVSHVINFDMPRTADVYLHRIGRTARAGKKGNAVSLIEAHDQPMMER
VGRYIKEDDIIKERFIEGLKPKHKKPVFKNKQKKNAKKKAALAKKKAPKKKKK
NT seq
1242 nt
NT seq
+upstream
nt +downstream
nt
gtgctcaaaacgtttgctgacctcgatctatcacctaacctattgcgtgctcttgaggag
atagattatcaacgtccaactcaagttcaggctatgactatccctgaagcattagaaggt
aaagatatccttgcttctgcaccaacagggacaggtaaatctgctgcattcttattacca
gctcttcagcacttagatgacttccctcgtcgcgaaccaggacctgctcgtattcttatc
ctgacgcctacacgtgaattagcaattcaagttgctgatgaagctcgtcaattagcaaaa
tatactcgtcataaagtatttacgattacaggtggtattagctaccaagatcacgctgat
attttagctactactcaagatatcgttgtagcaacccctggtcgtttaatggagtacatc
gaagctgagcgctttgattgtcgagctattgaaacccttattcttgatgaagcagatcgc
atgttagatatgggttttggccctgttgttgaccgtctatctaaagaatgccgttggcgt
aagcaaaccttcttattctcagcgacattagaaggtcgtggcgtagaaggctttactgca
gacctactgaatgaacctgcagagattaatgcagagccatcacgccgtgagcgtaaaaag
atcactcagtggtaccaccgtgctgacaacatggctcataaaattgatctgttaaaaaat
atcttaacagagcaagcagaacgctcaattgtattcgtaaaaacacgtgaacgtttagcg
gaacttcgtggccacttagaaacagcaaaaatcccttgtgcttggattcaaggtgaaatg
gctcaagaaagccgtaataacgcaatttctcgcttccgtgacggaacagtaaacgtgtta
attgcgacagatgttgctgctcgtggtattgatttacctgacgtttcacacgttatcaac
tttgacatgccacgtactgctgatgtgtacttacaccgtattggtcgtaccgctcgtgct
ggtaaaaaaggtaatgcggtatctttaattgaagcgcatgatcaaccaatgatggagcgt
gtaggtcgttacatcaaagaagatgacatcattaaagaacgcttcatcgaagggctaaaa
cctaagcataaaaaacctgttttcaaaaataaacagaagaaaaatgcgaagaagaaagct
gctttagcgaagaaaaaagcaccgaagaaaaagaagaagtaa
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