Aliivibrio fischeri ES114: VF_0450
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Entry
VF_0450 CDS
T00236
Symbol
recJ
Name
(GenBank) ssDNA exonuclease, 5' --> 3'-specific
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
vfi
Aliivibrio fischeri ES114
Pathway
vfi03410
Base excision repair
vfi03430
Mismatch repair
vfi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vfi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
VF_0450 (recJ)
03430 Mismatch repair
VF_0450 (recJ)
03440 Homologous recombination
VF_0450 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vfi03400
]
VF_0450 (recJ)
DNA repair and recombination proteins [BR:
vfi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
VF_0450 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
VF_0450 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
VF_0450 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
AAW84945
UniProt:
Q5E7Q1
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All DBs
Position
I:479248..480987
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AA seq
579 aa
AA seq
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MIEVKRRTVPSSTQLPDSIPPILQRIYAARGITSSSQLERGAKFLLSFQSMHGISKAVDI
LVEAIQKQTRIIVVGDFDADGATSSALSVMAFRMMGSQNVDYLVPNRFEDGYGLSPDVVD
QAKEMGAEIIMTVDNGVSSIDGVLKAKEYGMQVVVTDHHLPGAHLPLADAIVNPNLEACA
FPSKSLAGVGVAFYLMLAIRARLREINWFEKQNIAIPNLADLLDLVALGTVADLVALDEN
NRILVHQGIQRIRAGKCRPGIQALIEVANRVPSRIVASDFGFALGPRINAAGRLDDMSFG
VELLMSNNIHAARRMAAELDSLNQTRKEIEQGMKEEAMAICERLEFGAQSELPFGLVLFQ
RDWHQGVIGILASRIKEKYHRPVIAFADGGDGFIKGSCRSIAGFHMRDALDLIDTRNPGL
ILKFGGHAMAAGLTIKEADYKKFSQAFDDVVRESVEEEALKGIILSDGALTPEEFTLGTA
EIIRAGGPWGQAFPEPIFDGEFKVLNQRLVGEKHLKLMLEPIHRDFPTNKMVDAIAFNID
VRRWPDASVQKVKLAYRLDINEFRGNQTLQLMVENIEPL
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atgattgaagtgaaacgtcgaacagtaccatcctcaactcaacttcctgattcgatacct
ccgattttgcagcgaatttatgcagcgagagggattacatcaagctcgcagcttgagcgt
ggtgcaaaatttttactatcatttcaatcaatgcacggtatttctaaagctgtagatatc
ctagttgaagcaattcaaaagcaaactcgtattatcgttgttggggattttgatgccgat
ggtgcaaccagttcagcattatctgtaatggcatttcgtatgatgggaagtcaaaatgtc
gattacttggtgcctaaccgatttgaagacggctatggcttgagtcctgatgttgtggat
caagcaaaagagatgggtgctgagatcatcatgaccgttgataatggtgtttcatccatt
gatggtgttttgaaagcaaaagaatatggtatgcaagttgtggtaacggatcatcactta
cctggtgctcatttgcctcttgctgatgcgattgtaaaccctaatttagaggcgtgcgca
ttcccatctaaatctttagcaggtgtaggtgttgccttttatttaatgcttgctattcgt
gctcgtcttcgtgaaataaattggtttgaaaaacaaaatatagcgataccgaatttagct
gatttacttgatttagttgcgcttgggactgtggctgacttagttgctttggatgaaaat
aatcgaattcttgttcatcaaggtattcaacgcattcgcgctggtaagtgtcgaccaggg
atccaagcgctgattgaagtggctaaccgagttccatcacgtattgttgcttctgacttt
gggtttgcgttaggcccaagaataaatgcagcgggtcgtttggatgatatgtcatttggt
gttgagcttttaatgtcaaataatattcatgccgctcgtcgtatggcggcagaattagat
tcattaaatcaaactcgaaaagaaattgagcagggcatgaaagaagaagccatggctatt
tgtgagcgattagagtttggtgctcaaagtgaattgccttttggattggtgttgtttcag
cgtgattggcaccaaggtgttattggtattttggcttcacgtataaaagaaaaatatcat
cgtcctgtcattgcttttgctgacggtggtgatggttttattaaaggatcatgccgctct
attgcaggctttcatatgcgtgatgcattagatttgattgatactagaaatccaggcctt
attttgaaatttggtggacatgctatggctgctggattaaccattaaagaggcggattac
aaaaaattcagtcaagcttttgatgatgtcgtccgtgagtcggtagaagaagaagctctt
aaagggattattttatctgatggtgcactaacaccagaagaatttacattaggtacggct
gaaattatccgagcgggtggaccatggggacaagcttttcctgagcctatttttgatggt
gaatttaaagtattaaaccaacgtctagtgggcgaaaaacatcttaaattaatgttagag
ccgattcaccgtgattttccaaccaataaaatggttgatgctatcgcatttaatattgat
gttcgccgttggccagatgcttcagttcaaaaagtaaagttagcttatcgactcgatatt
aatgaatttcgtggaaatcagaccttacagcttatggttgagaacattgaaccactttaa
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