Aliivibrio fischeri ES114: VF_0456
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Entry
VF_0456 CDS
T00236
Symbol
nudH
Name
(GenBank) nucleotide hydrolase
KO
K08311
putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
Organism
vfi
Aliivibrio fischeri ES114
Pathway
vfi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vfi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VF_0456 (nudH)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vfi03019
]
VF_0456 (nudH)
Messenger RNA biogenesis [BR:
vfi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
VF_0456 (nudH)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NUDIX
NUDIX_4
Nudt16-like
Motif
Other DBs
NCBI-ProteinID:
AAW84951
UniProt:
Q5E7P5
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All DBs
Position
I:486918..487430
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AA seq
170 aa
AA seq
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MIDGDGFRPNVGIVICNSHGQVFWAKRYGQHSWQFPQGGIDDGETPEQAMYRELYEEVGL
TKNDVRILASSRHWLRYKLPKRLVRWDSKPVCIGQKQKWFLLRLECDESKVNMQRDRSPE
FDGWRWVSYWYPVRQVVSFKRDVYRRALKEFAVIAMPFKERKFKRKGKKG
NT seq
513 nt
NT seq
+upstream
nt +downstream
nt
gtgatagatggcgatggtttccgcccgaacgtcgggatagtgatatgtaatagccatggt
caagtattctgggcgaagcgatacggacagcattcgtggcaatttccgcaaggtggtatt
gatgatggtgagactccagaacaagccatgtaccgtgaattatacgaagaggtaggtctg
acaaaaaatgatgttcgtattttagcaagcagccgtcattggctacgatataaattaccg
aaacgtctagttagatgggactctaaacctgtttgtatcggacaaaaacaaaaatggttt
ttgttacgcttagaatgtgatgaatccaaggttaatatgcaaagagatcgctcgcctgaa
tttgatggttggcgatgggtaagctactggtaccctgtaagacaagtggtttcatttaag
cgtgatgtttatcgtcgagcactaaaagagttcgcggtgatcgctatgccgtttaaggaa
cgaaaatttaaaaggaaaggtaaaaaaggttaa
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