Aliivibrio fischeri ES114: VF_0581
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Entry
VF_0581 CDS
T00236
Symbol
recC
Name
(GenBank) exonuclease V (RecBCD complex), gamma subunit
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
vfi
Aliivibrio fischeri ES114
Pathway
vfi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vfi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
VF_0581 (recC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vfi03400
]
VF_0581 (recC)
Enzymes [BR:
vfi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
VF_0581 (recC)
DNA repair and recombination proteins [BR:
vfi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
VF_0581 (recC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Motif
Other DBs
NCBI-ProteinID:
AAW85076
UniProt:
Q5E7C0
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All DBs
Position
I:633104..636523
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AA seq
1139 aa
AA seq
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MFTVYHSNQLDVLKSLVVELIRLNPLDNPFEQEQILVQSPGMSQWLKIELAKELGIAANL
TFPLPATFIWDLFTQVLDDVPKRSAFHKEAMTWKIVTLLPELLKQEEFAPLQRYLENDKN
QLKCYQLAAKIADIFDQYLVFRPEWIQQWEAGEEVVELEGEHPWQPTLWRALYDQTLALG
HSPYHRANMFEHFIETLDNYLQTGTLSKGMPKRLFVVGITSLPPRYLDALAALGQHIDVH
LMFTNPCRYYWGEIRDRKYLARLEARNRLQVKWLDDHSEHIGDTEQLKGSIEANFEDELH
TSEVGNSLLASWGKLGRDNLCLLSEMEAQEIDAFVDVGNDNLLHSIQSDILNLEERSRDD
VLDNSQHKQPISSDDRSILLHSCHSPMREVEVLHDQLLDMFASDPDLKPRDIIVMVADIN
VYSAAIQAVFGNAAFDRYIPFAISDQSAEQENPVLLAFMTLMALPENRCGLSELLTLLEV
PAVMSRFKFNAEQFEIVKRWAEETGIRWGLDNSTSAQFDLPEHNQNSWLFGIQRMLLGYA
MEQGAGLFEGMASYEQVQGMNAEIAGNLAQFIDQLLTYQIILGQPHAITKWRTTINQLMD
DFLDVELEGELVVKSIRDQLQKLEENLEDAGFDAPISAPIINNYLKNNLSGGKASQRFLA
GQVNFCTLMPMRSIPFDVVCLLGMTDGSYPRTMPVEGFDLMQKRMKPGDRSRRDDDRYLF
LEALQSANKAFYLSYIGRSIRDNTEKAPSVLVSELLEYCQQGYCLEGDNELNPEASAKRL
VKQLTIEHPLVPYSQQSFIGDNISYASEWLPTAKLEGAAAPEFQTAPLVYAPETKELELT
ELQRFWRLPVAYFFNRGLKVFFESVESRVEDDEPFTIDGRTGYGMKSDLLEDLLAYDDPN
HVSQISRDFYQQQKAQGKLPIGSFGEITADKEVNTVKDLVAHIQPLTTLPLDDQEVRLRF
AFPHGEMELQGWLKQRYQAGMLRYRGGKIRSHEILATWIDHLCLCAMGQQQLTHLFGTDA
IYHFGTIEKEKAYQELETILSLYISGNCAPLAYLPKAALAGLEAHVDKKGVWNDDEETHQ
KALKKMADEYNGTRFAGENSNDYVIRMWPEWNDEFGQVIFDNAQKVLRNALLHSEKEKL
NT seq
3420 nt
NT seq
+upstream
nt +downstream
nt
gtgtttactgtttatcattcaaatcaacttgatgttcttaaatcacttgtcgttgagtta
attcgccttaacccccttgataacccgttcgaacaagagcaaatacttgttcaaagtccc
ggtatgtcgcaatggctcaaaatcgaactcgcaaaagagttagggattgccgctaatctt
acttttccactacctgctacttttatttgggacttgtttactcaggtgcttgatgatgtg
ccaaagcgcagtgctttccataaagaagcgatgacatggaaaatagtgacattattacct
gagctgttaaaacaagaggagttcgcacctctgcagcgctatttagaaaatgataaaaac
caacttaagtgctatcaactggctgcaaaaattgccgatatttttgaccaatatttggtg
ttccgtcctgagtggattcaacagtgggaagccggagaagaggtggtcgaattagaagga
gagcatccttggcaacctactttatggcgagcactttatgatcaaacacttgctcttggt
cattcgccttatcatcgtgccaatatgtttgagcactttattgaaacgctagataattat
ttgcaaacgggcaccttatcaaaagggatgcctaagcgtttgtttgtggtgggcatcact
tcactgcctcctcgttatttagatgcgcttgcggcgttaggtcagcatattgatgtgcac
ctaatgtttaccaatccgtgtcgttattattggggggaaattcgagacagaaaatacctt
gctcgtttagaagcccgtaatcggctgcaagttaaatggctagatgatcatagtgagcat
attggtgatacagaacagctaaaaggttctattgaggctaattttgaagatgaattacat
acttctgaagtggggaattccttgcttgcctcatgggggaaattaggtcgagataatttg
tgcttactctctgagatggaagcacaagagattgatgcctttgttgatgttggtaacgac
aatcttttgcattccattcagtctgatattttaaatcttgaagagcgcagtcgtgatgat
gtgcttgataacagtcagcataaacagccaatcagttctgatgatcgttccattcttttg
cattcgtgccatagcccaatgcgagaggttgaggttttacacgatcagttattggatatg
tttgctagtgacccagacttaaaaccacgcgacattatcgtgatggtggcagacattaat
gtttacagtgcggcgattcaagccgtctttggtaatgcggcgtttgatcgttatattcct
tttgcgatttccgatcaaagtgctgagcaagaaaacccagtgttattggctttcatgacc
ttgatggcgctgcctgagaatcgctgtggtctttctgaattgctcacattattggaagtc
cctgccgtaatgtctcgttttaaattcaatgccgagcaatttgaaattgtgaaacgttgg
gctgaagaaactgggattcgttgggggctagataacagcacatctgcacagtttgatctt
cctgaacacaatcaaaactcttggttatttggtattcaacgcatgttgcttggttatgcg
atggagcaaggtgctgggctattcgaaggcatggcgagttacgagcaagtgcagggcatg
aatgcggaaattgccggtaacttagcgcagtttattgatcagcttttgacttatcagatc
atcctaggccaaccgcatgcaattacgaaatggcgaaccaccatcaaccaattaatggat
gattttttagatgttgaattagaaggtgaattggtcgttaaaagcattcgagatcaactg
caaaaactggaagaaaatctagaagatgcgggttttgatgcgccaatctcagcgccaatt
attaataattatctgaaaaataatttatctggcggtaaagcgagtcaacgattcttagcg
ggacaagttaacttctgtaccttaatgccaatgcgttctattccatttgatgtggtgtgt
ttgcttgggatgacggatggatcttaccctagaaccatgcctgttgaaggtttcgattta
atgcaaaaacgcatgaaaccgggtgaccgttcacgtcgagatgatgatagatatctgttt
ttagaagcgctgcaatcggcaaataaagcgttttatttaagttatattgggcgttcaatt
cgcgataacacagaaaaagcaccgtcagtattagtcagtgagctacttgaatattgccag
caaggttactgcctagagggtgataatgagctaaaccctgaagcatccgcaaaacgcttg
gttaagcaattaaccatagaacatcctttggttccttacagccaacaaagtttcattggt
gacaacataagttatgcaagtgagtggttaccaacggccaaattagaaggggcagcggca
cctgagtttcagactgcgccattagtgtacgctccagaaacaaaagagttagagttgact
gaactgcaacgtttttggcgtttacctgtcgcttatttctttaaccgtggcttaaaagtc
ttttttgaatcggtagagagtcgagttgaagatgatgagccgtttaccatcgatggtcgt
actggctatggtatgaaatcggatctattagaggacttattggcctatgatgatcctaac
catgtatcccaaatctcccgtgatttttatcagcagcaaaaagcccaaggtaaattaccg
attggtagctttggtgaaataacagcagataaagaagtgaacacggtaaaagatttggtt
gctcatattcaaccattaacgacgttaccattagacgatcaagaagtacgtttacgcttt
gccttccctcatggtgaaatggaactgcaaggttggttaaaacagcgttatcaggcagga
atgttgcgttatcgtggtggtaaaattcgttcacatgaaattctagcaacttggattgat
cacctgtgtttgtgtgcaatgggccagcagcaattgactcatctatttggtacggatgcg
atttatcattttggaaccatcgaaaaagaaaaagcataccaagaactagagactatatta
agtctttatatttcaggtaattgcgcaccgttagcttatttaccaaaagcggcattagca
gggctcgaagcacacgttgataaaaaaggtgtgtggaatgatgacgaagaaacgcatcaa
aaagccctgaaaaaaatggcagatgaatacaatggaacccgctttgctggtgaaaatagc
aatgattatgtgatacgcatgtggccagaatggaatgatgagtttggtcaggttattttt
gataatgctcaaaaggtgttacgcaatgcattgttgcatagcgagaaagaaaaattataa
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